PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543991.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 503aa    MW: 56196.4 Da    PI: 6.3212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.72.1e-931035002373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl++ f++AL +r a+    ++ +++++s+ s++ ++++++ + l  f++++P+++f
  XP_023543991.1 103 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRAANtGNCKILASITTSAFSSSLTTHTFSLMDLaaFVDLTPWHRF 197
                     79****************************************************4445677777777777766665555555567********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl.. 181
                     ++ +aN aIl+a++g ++vH++Df++++++Q p+L++a+a+R e pp l++T+v++++ +      + ++ e+g +L +fA++ +v++ef+v+  
  XP_023543991.1 198 GFTAANAAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAAAAVKdappmLELSYDELGAKLVNFARSRNVSMEFRVVps 292
                     *******************************************************9887788877788899*********************999 PP

            GRAS 182 .vakrledleleeLrvkp.......gEalaVnlvlqlhrll..............desvsles.erdevLklvkslsPkvvvvveqeadhnsesF 253
                      +++ +++l +e++rv++       + al+ n+++ lh+++              d    ++s  r+ +Lk+++sl P++v++ve++ad +s+++
  XP_023543991.1 293 cHTDGFANL-IEQIRVQHliygpenNGALVFNCHMLLHYIPeetlnpnpnpspsfD----MSSsVRSMFLKTIRSLDPTIVILVEEDADFTSTEL 382
                     844444444.55555555555558799**************888888888754333....3334567**************************** PP

            GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                     + r+ +a++y +  +ds+++ lpr s++r ++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+ +p++++a++++k++l +++  g
  XP_023543991.1 383 VSRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEAD-ICWKIENVIAHEGIQRVERLEPKGRWIQRMRNAKFRGAPFGDEAVSEVKTMLDEHA-AG 475
                     ***********************************.********************************************************.99 PP

            GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
                     + +++e++ lvl+Wk++ +v+++aW
  XP_023543991.1 476 WGLKKEDDHLVLTWKGHDVVFATAW 500
                     9************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
PPPPPPPLVV SFSLLSVSEF PPFSFPFWLY LPFLSSLHDA IQAHTPRFHH TILNSFPDIS  60
MSNKTQITTT SGHQLRRRPW PGLLFPCSSK ALGTCFGDAN CMEQLLVHCA NAIESNDATL  120
AQQILWVLNN IAPPDGDSNQ RLTSAFLRAL VTRAANTGNC KILASITTSA FSSSLTTHTF  180
SLMDLAAFVD LTPWHRFGFT AANAAILDAI DGYSAVHVVD FSLMHCMQIP TLIDAIATRF  240
EVPPLLKLTT VAAAAVKDAP PMLELSYDEL GAKLVNFARS RNVSMEFRVV PSCHTDGFAN  300
LIEQIRVQHL IYGPENNGAL VFNCHMLLHY IPEETLNPNP NPSPSFDMSS SVRSMFLKTI  360
RSLDPTIVIL VEEDADFTST ELVSRLRSAF NYLWIPYDSM DSFLPRSSKQ REWYEADICW  420
KIENVIAHEG IQRVERLEPK GRWIQRMRNA KFRGAPFGDE AVSEVKTMLD EHAAGWGLKK  480
EDDHLVLTWK GHDVVFATAW VPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-162GRAS family protein