PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543775.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 232aa MW: 25631.8 Da PI: 7.9452

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.9	2.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_023543775.1 2 SCNGCRVLRKGCSESCILRPCLqwietSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 6*******************9998777889************************************************************* PP DUF260 91 kaelall 97 +++++l+ XP_023543775.1 97 AVDTVLR 103 9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MSCNGCRVLR KGCSESCILR PCLQWIETSE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLRGGTLRPI NDFLAAGSPN 120 LSSDETSEAE VACTDMWKLR DSYPNSRFSN SRSRLSPKRK RSEESSTKNQ LNDLNLRLTP 180 TFVSKSTPRA ATPSMNSEES ETTTCFESGL GDHHHYYPEE GTTQRKLLNL FV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-79	LBD family protein