PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543745.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 438aa MW: 50457.7 Da PI: 9.1484

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.4e-11	316	363	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W++I r++ +Rt+ +++++w+++l XP_023543745.1 316 WTLTEVMRLVDGIAEYGTGRWTRIKRHLFassPHRTPIDLRDKWRNLL 363 **************************99**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MDQEVHFCQK FTNMNYHWVK MEGSFLPAPL NESNEVDHFL VEPKSDHELG NCLRVQDFSR 60 DFGYEIQTNG DAEVDENSFR QNRGLQLGKP SSESKSQGSS RSDTDAFEIS ELSATMVMEA 120 EFNNTPVERS LTRELFSGLR TRGGCATPFE GNICDTILDN NNIHKFNTNE NYLQNEKISD 180 ENVKGDIVAS KLASCSRERR LRKPTRRYIE EFADSKSENN KGRRKSPTKD KYLKVTSTVE 240 SNHIRHKVQM LAPKDESHCG TSVPVQSRSQ RRHPEKHVPV SGFLSEDEPS ATECKNVYSS 300 AKICKKYDRR KHQKMWTLTE VMRLVDGIAE YGTGRWTRIK RHLFASSPHR TPIDLRDKWR 360 NLLKASCVNI QNSKGTECKQ PHASRPLPKS LLQRVYELAN IYPYPKERSP KPVREATPPM 420 YLIESNSLSF NWGRKKYE

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MDQEVHFCQK FTNMNYHWVK MEGSFLPAPL NESNEVDHFL VEPKSDHELG NCLRVQDFSR  60
DFGYEIQTNG DAEVDENSFR QNRGLQLGKP SSESKSQGSS RSDTDAFEIS ELSATMVMEA  120
EFNNTPVERS LTRELFSGLR TRGGCATPFE GNICDTILDN NNIHKFNTNE NYLQNEKISD  180
ENVKGDIVAS KLASCSRERR LRKPTRRYIE EFADSKSENN KGRRKSPTKD KYLKVTSTVE  240
SNHIRHKVQM LAPKDESHCG TSVPVQSRSQ RRHPEKHVPV SGFLSEDEPS ATECKNVYSS  300
AKICKKYDRR KHQKMWTLTE VMRLVDGIAE YGTGRWTRIK RHLFASSPHR TPIDLRDKWR  360
NLLKASCVNI QNSKGTECKQ PHASRPLPKS LLQRVYELAN IYPYPKERSP KPVREATPPM  420
YLIESNSLSF NWGRKKYE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	204	ERRLRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-24	MYB_related family protein