PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543571.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 319aa MW: 35615 Da PI: 7.5146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023543571.1 155 FSCPVCFKTFNRYNNMQMHM 174 89*****************9 PP
2	zf-C2H2	14.7	8.9e-05	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_023543571.1 239 FMCRKCGKAFAVRGDWRTHEKNC 261 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MSHPCSNSLA SVPKFISFHH HSSPSQPSNS SPNMSHNCFS YPYPSSIPSL NPPPPSSPPL 60 REALPLLRLM SPPEQRQEQE EDDDDGGSKD DNASVTVALH IGLPNPSPAE IASLMCGSSS 120 EIDQEHEFGQ STKTLIKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ 180 YRKGPESLRG TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGLKPFM 240 CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHVKAFGNDH AAYGGGGIDV 300 FGDEDDEPAS EVEQDNDER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-130	C2H2 family protein