PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543551.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 716aa MW: 80077.2 Da PI: 6.0068

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	122	142	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C ff++ G C GdrC F Hgp XP_023543551.1 122 CIFFQK-GLCLKGDRCAFLHGP 142 ****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MVGGGPQVLE QPQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV 120 SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV PQMATNGQAS EPSVKKIAGG TQRSNQEQKN 180 PQEIFLKSVG DASVKLAMKD EGAPSKIGNI NEKSRPPAKV ADGGSRYKAT KSRPILNESS 240 LSRGNRLQQS HVIDDHGLQN GKDADEFLKE SSPGFDVLVD DELRGSGYYG SEEQYGRTRG 300 HDGANMISMN DYDISHSADY KMMANVDHDV YNDVTDYDYD TRKGQYGWDQ RWTSSEKLSL 360 GSAQMERRLS RKSISPEHVQ NVDLRHRLNK QRRGNGLRSV INNENVANRP EERNYHASRR 420 DSHPSQESSM SNRLRGRIKL PRIPSPVRGS NVVPERDFNR GRPGGRLSPG RSLSLSYQES 480 NRDEMKGKLE VDYNNERRNF NGLNSGRDGM DETSDFAAPK RLAELKGEKH VVSKEKQTLG 540 KRKGFDNDQP GVELSFEGPK SLSEILRKKR QVKSAVDLPM NNAERESSER LKERSSIPSV 600 EQGGLSSTSK QKANSLEGIM SAPVETFGKE EENINVTHRN SSQPIHSTND HVIEAYEETF 660 EDPEYEGDDL RDGEYEYEEV DDREYNYEEG DNVVPEEEYM DDEDGDDFAK KIGVMS

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MVGGGPQVLE QPQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV  120
SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV PQMATNGQAS EPSVKKIAGG TQRSNQEQKN  180
PQEIFLKSVG DASVKLAMKD EGAPSKIGNI NEKSRPPAKV ADGGSRYKAT KSRPILNESS  240
LSRGNRLQQS HVIDDHGLQN GKDADEFLKE SSPGFDVLVD DELRGSGYYG SEEQYGRTRG  300
HDGANMISMN DYDISHSADY KMMANVDHDV YNDVTDYDYD TRKGQYGWDQ RWTSSEKLSL  360
GSAQMERRLS RKSISPEHVQ NVDLRHRLNK QRRGNGLRSV INNENVANRP EERNYHASRR  420
DSHPSQESSM SNRLRGRIKL PRIPSPVRGS NVVPERDFNR GRPGGRLSPG RSLSLSYQES  480
NRDEMKGKLE VDYNNERRNF NGLNSGRDGM DETSDFAAPK RLAELKGEKH VVSKEKQTLG  540
KRKGFDNDQP GVELSFEGPK SLSEILRKKR QVKSAVDLPM NNAERESSER LKERSSIPSV  600
EQGGLSSTSK QKANSLEGIM SAPVETFGKE EENINVTHRN SSQPIHSTND HVIEAYEETF  660
EDPEYEGDDL RDGEYEYEEV DDREYNYEEG DNVVPEEEYM DDEDGDDFAK KIGVMS