PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543513.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 870aa MW: 96722.8 Da PI: 7.8516

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	305	326	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_023543513.1 305 VICKYFAA-GSCRNGKNCKYSHH 326 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MFILPVFRRK SLRVMSGSGR KHSSKWDLRE DSHFEADSVQ DHSWPGKESR PGWISAEIAS 60 DDGSKWSGMA TTNTVSKPMQ DWGLLSEEEP LPGTRASLKE DRPNKGYNKN MDGTAECDAD 120 KSYDTRMSPD LDGRRSHGSD LSDRNDWIRG RSRSRSWSRS PPHGNKRDSG FHDRNRNRTR 180 VSTQLCRDFT SGRCRRGNGC QFLHQDDQNL DDSLENRNRK GGRSFRSNSH DFKDHPRSGR 240 SAAHCTDFVK GRCHRGASCT FSHDSAFHEL SRDSPNDIAR DRKNDRSKEV YFSRGEREPC 300 SSSLVICKYF AAGSCRNGKN CKYSHHSQPR ASPERKSSTD KWEHVQCSDG REQSWDGLKS 360 SELASGSDFT QLIEDKKEET ASEEPRYTWP SDKKCDHGLN NESKTRWDRA VDIKTVRSNK 420 NDAIPSKVEN AGGCTGSSDP RGHRKWPSDD MEMSPDWHYP VQPSNHVVKG DCNVMQDSGS 480 QTSTALAISH AIVQEALAKN QDIAIEPIVV DITHFRKNHT LTKDDTIASA SNDNITIDRT 540 VASHAEGNPS GNVVLGQRMA YHSDHPDGTV TNPKISDGNF RVKLQKEDES MPGINSGTTV 600 TPNIVTNDQI RQITDLSASL AQYFGNAQPL PQLYASLNAQ SVSEAPSFPY SDASVGALGA 660 SMKTAPVIES SKQHDSALCN SLQLKKLEVT KTPQKSTTEV KGEVQIPNLP LSSGPCGISA 720 EETLHGKPTA DGDAIKEKNG DGDNENKTDP ATNEDSQKID TTENANGNDE IHDKKKSKDT 780 KGIRAFKFAL VEFVKELLKP TWKEGHISKD VYKTIVKKVV DKVTGSLQDG HIPQTQEKID 840 HYLSFSKSKL TKLVQVMHIL KIQLVATITF

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MFILPVFRRK SLRVMSGSGR KHSSKWDLRE DSHFEADSVQ DHSWPGKESR PGWISAEIAS  60
DDGSKWSGMA TTNTVSKPMQ DWGLLSEEEP LPGTRASLKE DRPNKGYNKN MDGTAECDAD  120
KSYDTRMSPD LDGRRSHGSD LSDRNDWIRG RSRSRSWSRS PPHGNKRDSG FHDRNRNRTR  180
VSTQLCRDFT SGRCRRGNGC QFLHQDDQNL DDSLENRNRK GGRSFRSNSH DFKDHPRSGR  240
SAAHCTDFVK GRCHRGASCT FSHDSAFHEL SRDSPNDIAR DRKNDRSKEV YFSRGEREPC  300
SSSLVICKYF AAGSCRNGKN CKYSHHSQPR ASPERKSSTD KWEHVQCSDG REQSWDGLKS  360
SELASGSDFT QLIEDKKEET ASEEPRYTWP SDKKCDHGLN NESKTRWDRA VDIKTVRSNK  420
NDAIPSKVEN AGGCTGSSDP RGHRKWPSDD MEMSPDWHYP VQPSNHVVKG DCNVMQDSGS  480
QTSTALAISH AIVQEALAKN QDIAIEPIVV DITHFRKNHT LTKDDTIASA SNDNITIDRT  540
VASHAEGNPS GNVVLGQRMA YHSDHPDGTV TNPKISDGNF RVKLQKEDES MPGINSGTTV  600
TPNIVTNDQI RQITDLSASL AQYFGNAQPL PQLYASLNAQ SVSEAPSFPY SDASVGALGA  660
SMKTAPVIES SKQHDSALCN SLQLKKLEVT KTPQKSTTEV KGEVQIPNLP LSSGPCGISA  720
EETLHGKPTA DGDAIKEKNG DGDNENKTDP ATNEDSQKID TTENANGNDE IHDKKKSKDT  780
KGIRAFKFAL VEFVKELLKP TWKEGHISKD VYKTIVKKVV DKVTGSLQDG HIPQTQEKID  840
HYLSFSKSKL TKLVQVMHIL KIQLVATITF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-09	C3H family protein