PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543503.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 484aa    MW: 54960.5 Da    PI: 5.0609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.91.6e-1061034832374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     v+ Lle A+a+s+++ +++++l++ l+el+sp+gd+ q+laayf++AL +r+++s+++ y al++ ++++ + +++ +++  f+evsP+ +f+h+
  XP_023543503.1 103 VDILLETARAISERNSARVHQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYCALASASEKTCSFDSTRKVMLKFQEVSPWTTFGHV 197
                     678*********************************************************9998888887777777777778************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak 184
                      +N a+ ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+++  ++g       s++ ++e+g r++kfA+ +gvpf+fn+l+++
  XP_023543503.1 198 SCNGALIEALEGESKLHIIDISSTYCTQWPTLLEALATRTDDTPHLRLTTIVTTKPGngtgvsaSQKVMKEIGTRMEKFARLMGVPFKFNALYHS 292
                     *****************************************************998899*********************************777 PP

            GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh....nsesFlerflealeyysalfdsleak 274
                      +l++l++ +L++k++Eala+n+v +l ++     +++++rd +++ ++sl+P++++v+e+ead+    ++++Fl++f e+l+++ + f++l+++
  XP_023543503.1 293 gDLSELDFAKLDIKEDEALAINCVGALRSIT----AINNRRDFLISSFRSLRPRIITVIEEEADLdvgvDGTEFLRGFQECLRWFRVYFETLDES 383
                     7*****************************7....999999*********************8772222466*********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     + r+s+er ++Er+  gr+iv++vac+ a+++er+e++ +W +rl+  GF+pv++s+++ +++++llr++k ++ ++ +++ + ++l+Wk++p+v
  XP_023543503.1 384 FTRTSNERLMLERA-AGRAIVDLVACSAADSVERRESAVRWAQRLHGNGFSPVTFSDEVCDDVRALLRRYKeGWAMTQNSDVAGIFLTWKEQPVV 477
                     **************.********************************************************555566667788889********* PP

            GRAS 369 svSaWr 374
                     ++SaWr
  XP_023543503.1 478 WASAWR 483
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    
MDTLFRLVNL QSEQSYNSSR TNSSSSRSSR QNQYQYHQQD DDQECYNLLM DDEDFSSSSN  60
SRQYYNPYHP HPPSTATPTP IDQFSYVSPS PDINFEFSGR WAVDILLETA RAISERNSAR  120
VHQLMWMLNE LSSPYGDTDQ KLAAYFLQAL FSRMTDSGDR NYCALASASE KTCSFDSTRK  180
VMLKFQEVSP WTTFGHVSCN GALIEALEGE SKLHIIDISS TYCTQWPTLL EALATRTDDT  240
PHLRLTTIVT TKPGNGTGVS ASQKVMKEIG TRMEKFARLM GVPFKFNALY HSGDLSELDF  300
AKLDIKEDEA LAINCVGALR SITAINNRRD FLISSFRSLR PRIITVIEEE ADLDVGVDGT  360
EFLRGFQECL RWFRVYFETL DESFTRTSNE RLMLERAAGR AIVDLVACSA ADSVERRESA  420
VRWAQRLHGN GFSPVTFSDE VCDDVRALLR RYKEGWAMTQ NSDVAGIFLT WKEQPVVWAS  480
AWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein