PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543399.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 493aa MW: 56316.7 Da PI: 6.0112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	304	349	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + ErrRR++i++++ Lr l+P+ + K++ a+i A++YI++L+ XP_023543399.1 304 NLITERRRRNKIRDRLYALRALVPNiS------KMDRASIIVDAINYIRELE 349 5678*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MRGFEGALEC LRALVETKVW DYCIVWRSRD DSSRFIDWVG CCCSGGSFDD GGKREAGETI 60 PATLCKDTRF RHFRRTNACQ ALAQFPSTIS LNSGVHGDVL ISNQPMWLTS AEVSSTSSFS 120 HELTGTRVLI PISAGIVELF ATKHMPRDRE VIDFVMAHCN ISMEQEFDTE SELDGDLNEK 180 RLDSCTKYYS VDWPDPQPLL DFKSKLEILP SVSQSNSFPS CEGSSSGSKP SNEHHYFDSY 240 SSLVSRGFFN QPIHRSFESK RPTPQEDLLE QQRDVVSDYS KFLQKDEAKT GGGRQGKEIY 300 KSKNLITERR RRNKIRDRLY ALRALVPNIS KMDRASIIVD AINYIRELEE NVKNLQNELV 360 QLEHKDCQKN RHLKISPSEK NKDDTIYWPL VQNDQPMFIL GEEKPMEVEV EVMQINERDF 420 LIKLFCKQTQ GGVVSSIEAM DSLGLQVVDV NITTFGGMVL NIFHVEANEN DIQPKRLRDS 480 LIKLTSREMR QLK

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MRGFEGALEC LRALVETKVW DYCIVWRSRD DSSRFIDWVG CCCSGGSFDD GGKREAGETI  60
PATLCKDTRF RHFRRTNACQ ALAQFPSTIS LNSGVHGDVL ISNQPMWLTS AEVSSTSSFS  120
HELTGTRVLI PISAGIVELF ATKHMPRDRE VIDFVMAHCN ISMEQEFDTE SELDGDLNEK  180
RLDSCTKYYS VDWPDPQPLL DFKSKLEILP SVSQSNSFPS CEGSSSGSKP SNEHHYFDSY  240
SSLVSRGFFN QPIHRSFESK RPTPQEDLLE QQRDVVSDYS KFLQKDEAKT GGGRQGKEIY  300
KSKNLITERR RRNKIRDRLY ALRALVPNIS KMDRASIIVD AINYIRELEE NVKNLQNELV  360
QLEHKDCQKN RHLKISPSEK NKDDTIYWPL VQNDQPMFIL GEEKPMEVEV EVMQINERDF  420
LIKLFCKQTQ GGVVSSIEAM DSLGLQVVDV NITTFGGMVL NIFHVEANEN DIQPKRLRDS  480
LIKLTSREMR QLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-66	bHLH family protein