PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543335.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 341aa MW: 38169.8 Da PI: 4.6659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	172	215	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L XP_023543335.1 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MELSQHGFLE ELLASTPWSS SYSNGFNDFF QNTWNFGCFD ENPQMGTSIS PHFPALQTAT 60 DFSFADQYLY TNFLEGFAMP ELDSSSYTRN NETPPFVSQE EMSNKNSGFP PLGMEEEELG 120 FMEAEAAPSV CKVEMEQMGG RETSDSKMGV AESRKRTSNK AKKIEGQPSK NLMAERRRRK 180 RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEDEFGL DSNHVGFNGI 240 SKEGKPNEVQ VRNSPKFDIE KRESKTRIDI CCATRPGLLL STVNTLEALG LEIQQCVISC 300 FNDFSMQACC SEQGSGEKAV ASSDDVKEAL FRNAGYGGKC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	182	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-79	bHLH family protein