PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543094.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 567aa MW: 61784.8 Da PI: 8.2269

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	219	263	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_023543094.1 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVES 263 79****************************************986 PP
2	QLQ	54	5.2e-19	150	186	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q+l+yKyL++n+P+P++Ll +++k XP_023543094.1 150 GPFTQSQWVELEHQALIYKYLSSNVPLPSNLLIPLKK 186 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MDFGVVGLDG FVDSGDAPSP HSKLKSHGSC FSKQDRSGFV DDDWRNSKIP KTEPISGSKT 60 MPLHQGFPLL RSNTFISSSD GRQKEHMLSF SSLKSETSLL PKHSDLIARN PQNSIFPHNQ 120 HKSSVYSRNT GCVSGSYNGS MHGGIAGIRG PFTQSQWVEL EHQALIYKYL SSNVPLPSNL 180 LIPLKKSLYP YGFTCSSAGS MPPNSRWGSF HLGFSGNTDP EPGRCRRTDG KKWRCSRDAV 240 ADQKYCERHI NRGRHRSRKP VESQTGHSAP GTTNPTPMVT SISTSLSSTV VPSGGASNNL 300 PVIPHQLKSL HPVAASDPGA DAPGNRLLNR ETVCSRIQET GGLSMMSSNV NLMASNEKCG 360 AKQEISVGDE FGLVSTDSLL NPSQQRGSYA NPKNYDSFLI YSDQETQDHD QHPLRQFFED 420 WPKDQSSRSV MTWPEEFKSD WTQLSMSIPM SDFSSSSSSP THEKLAQSPP LRLSRELEPI 480 QMNLGARKND DELVEKQSNQ IAAAMCWGSS MGGPLGEALT NRSNCVKGSK VPPSLNLLGE 540 GWDGSQLGSS PTGVLQKATF CSLSNSS

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MDFGVVGLDG FVDSGDAPSP HSKLKSHGSC FSKQDRSGFV DDDWRNSKIP KTEPISGSKT  60
MPLHQGFPLL RSNTFISSSD GRQKEHMLSF SSLKSETSLL PKHSDLIARN PQNSIFPHNQ  120
HKSSVYSRNT GCVSGSYNGS MHGGIAGIRG PFTQSQWVEL EHQALIYKYL SSNVPLPSNL  180
LIPLKKSLYP YGFTCSSAGS MPPNSRWGSF HLGFSGNTDP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHI NRGRHRSRKP VESQTGHSAP GTTNPTPMVT SISTSLSSTV VPSGGASNNL  300
PVIPHQLKSL HPVAASDPGA DAPGNRLLNR ETVCSRIQET GGLSMMSSNV NLMASNEKCG  360
AKQEISVGDE FGLVSTDSLL NPSQQRGSYA NPKNYDSFLI YSDQETQDHD QHPLRQFFED  420
WPKDQSSRSV MTWPEEFKSD WTQLSMSIPM SDFSSSSSSP THEKLAQSPP LRLSRELEPI  480
QMNLGARKND DELVEKQSNQ IAAAMCWGSS MGGPLGEALT NRSNCVKGSK VPPSLNLLGE  540
GWDGSQLGSS PTGVLQKATF CSLSNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	7e-92	GRF family protein