PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543041.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 309aa    MW: 35164.8 Da    PI: 10.0319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-08199237947
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      d l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_023543041.1 199 DRLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKY 237
                      6789999*****************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MVVMFHDSRW TTMTQSSTQW TRSEDKLFEE ALVVVPADLP DRWQRVADLV PGKLPREVKD  60
HYEALVYDVL EIDSGRVELP SYSDESAVGS PEWDSSGQIS FGSKAKPGGD SERKKGTPWT  120
XVFFNIKFLS IGLKAKSNSC SSFQLLPPMF RDLLLRLKLE FRRPMGETKQ RVSNDVHVTL  180
GLSRSLVSLL MQSYVWHYDR LFLLGLKKFG KGDWRSISRN VVITRTPTQV ASHAQKYFLR  240
QNSGKKERKR SSIHDITTVD NNSAPIPFDP NWISPVPNPT IQSSMQQQLS PTGHLQDQGG  300
ALQTYRFPM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-29MYB family protein