PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542883.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 387aa MW: 43178.7 Da PI: 6.5071

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	190	248	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_023542883.1 190 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 248 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MFCNLFEMDN DNYQQAGDLT DVIRASSAAT SAAHSSEFSL GDRHLLPHLP TDDSSMNFGD 60 PLLLPTSSTR DPFLHPHFSS FNFDSHGGGW GFTAAERPST VFPRMLQISP TSKVVDGVIT 120 TPPCDSPAVA ATGNSPTSNP LCLRDNSDLQ ISPPRNPAIK RRKNQVKKVV CIPAPAPANS 180 RSSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT 240 YTSEHNHPWP TQRNALAGST RSHPSRTSTS TTRITSPKHE NNNENLASMT IKEEDMNEEQ 300 MTEKAAITTN QHQVEGDHQE FLYDLIFDEF ADQMNEHNRH HATDTMNDNL LRFSNHGFSK 360 GNDEECSKDP FLELYDWTEK SNGSLFK

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MFCNLFEMDN DNYQQAGDLT DVIRASSAAT SAAHSSEFSL GDRHLLPHLP TDDSSMNFGD  60
PLLLPTSSTR DPFLHPHFSS FNFDSHGGGW GFTAAERPST VFPRMLQISP TSKVVDGVIT  120
TPPCDSPAVA ATGNSPTSNP LCLRDNSDLQ ISPPRNPAIK RRKNQVKKVV CIPAPAPANS  180
RSSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT  240
YTSEHNHPWP TQRNALAGST RSHPSRTSTS TTRITSPKHE NNNENLASMT IKEEDMNEEQ  300
MTEKAAITTN QHQVEGDHQE FLYDLIFDEF ADQMNEHNRH HATDTMNDNL LRFSNHGFSK  360
GNDEECSKDP FLELYDWTEK SNGSLFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-66	WRKY family protein