PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023542668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 47692.1 Da PI: 5.0315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.6e-12 | 123 | 145 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_023542668.1 123 EDCAFYLRTGTCKFGSLCKFNHP 145 78********************9 PP | |||||||
2 | zf-CCCH | 21.3 | 4.7e-07 | 151 | 169 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG Ck+G C+++H XP_023542668.1 151 QYYSRTGGCKFGTACRYNH 169 59***************** PP | |||||||
3 | zf-CCCH | 34.2 | 4.4e-11 | 194 | 216 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_023542668.1 194 KECPYYMRTGCCKYGANCKFNHP 216 68********************9 PP | |||||||
4 | zf-CCCH | 19.4 | 1.9e-06 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_023542668.1 318 PGQPECSYFLKTGDCKFKSLCIYHHPK 344 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.8 | 1.3e-11 | 366 | 389 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G++CkF H+ XP_023542668.1 366 QNVCTYYSRYGICKFGPSCKFDHP 389 568********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence |
MEPSEAVSVL IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEEE EEMVVDAGDG GEVEKDGEMR GGNNRYPVRS 120 EAEDCAFYLR TGTCKFGSLC KFNHPLRKRH QYYSRTGGCK FGTACRYNHT RPRALPNPIL 180 ELNFLGLPIR LNEKECPYYM RTGCCKYGAN CKFNHPDPTT VAVPESLSGY NNGVLLQGGA 240 SQSQITSWTS PRVLNETPTF VPAMISPSQD SEWNAYQAPM YPSEISMLPP PTYAVNNIAS 300 ETDLYPSHQQ VEEHPERPGQ PECSYFLKTG DCKFKSLCIY HHPKNWNLKL PTCTLNDKGL 360 PLRPDQNVCT YYSRYGICKF GPSCKFDHPI LPASSTSELK QQPHYSNFNA AEGAEMGGGS 420 GNGVTVEQSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-114 | C3H family protein |