PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542667.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 452aa MW: 50164.8 Da PI: 5.0656

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.1e-12	123	145	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_023542667.1 123 EDCAFYLRTGTCKFGSLCKFNHP 145 78********************9 PP
2	zf-CCCH	28.6	2.5e-09	171	191	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+++H XP_023542667.1 171 ECKYYSRTGGCKFGTACRYNH 191 8******************** PP
3	zf-CCCH	34.1	4.6e-11	216	238	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_023542667.1 216 KECPYYMRTGCCKYGANCKFNHP 238 68********************9 PP
4	zf-CCCH	19.3	2e-06	340	366	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_023542667.1 340 PGQPECSYFLKTGDCKFKSLCIYHHPK 366 5789*********************96 PP
5	zf-CCCH	35.7	1.4e-11	388	411	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G++CkF H+ XP_023542667.1 388 QNVCTYYSRYGICKFGPSCKFDHP 411 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MEPSEAVSVL IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEEE EEMVVDAGDG GEVEKDGEMR GGNNRYPVRS 120 EAEDCAFYLR TGTCKFGSLC KFNHPLRKRH QVVSEKLKHE NDSAEQTSKT ECKYYSRTGG 180 CKFGTACRYN HTRPRALPNP ILELNFLGLP IRLNEKECPY YMRTGCCKYG ANCKFNHPDP 240 TTVAVPESLS GYNNGVLLQG GASQSQITSW TSPRVLNETP TFVPAMISPS QDSEWNAYQA 300 PMYPSEISML PPPTYAVNNI ASETDLYPSH QQVEEHPERP GQPECSYFLK TGDCKFKSLC 360 IYHHPKNWNL KLPTCTLNDK GLPLRPDQNV CTYYSRYGIC KFGPSCKFDH PILPASSTSE 420 LKQQPHYSNF NAAEGAEMGG GSGNGVTVEQ SA

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MEPSEAVSVL IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE  60
AAVKDFDGGG EWEVEKNPVE GEGNLEEEEE EEMVVDAGDG GEVEKDGEMR GGNNRYPVRS  120
EAEDCAFYLR TGTCKFGSLC KFNHPLRKRH QVVSEKLKHE NDSAEQTSKT ECKYYSRTGG  180
CKFGTACRYN HTRPRALPNP ILELNFLGLP IRLNEKECPY YMRTGCCKYG ANCKFNHPDP  240
TTVAVPESLS GYNNGVLLQG GASQSQITSW TSPRVLNETP TFVPAMISPS QDSEWNAYQA  300
PMYPSEISML PPPTYAVNNI ASETDLYPSH QQVEEHPERP GQPECSYFLK TGDCKFKSLC  360
IYHHPKNWNL KLPTCTLNDK GLPLRPDQNV CTYYSRYGIC KFGPSCKFDH PILPASSTSE  420
LKQQPHYSNF NAAEGAEMGG GSGNGVTVEQ SA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-122	C3H family protein