PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542628.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 546aa MW: 59473.5 Da PI: 5.9532

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	362	404	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_023542628.1 362 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 404 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MLSRVGSVGW MENREDEGSA SWTNNNTHNH LNHPAANCSV LDNKDQISSL STFKSMLEVE 60 DDWCIAANAL HNHHDINGIS FSQNFTDPPD NLLLPHGDSS SSCSPSSSVF NNIDPSQLQF 120 FLPPTRTLSS LYKVIGNNPL EHGFDFGAEV GFLDVQASNT SALLSSGGGL LTGFTDLSPT 180 SQMNSPNMCL GSQLTTPNLP QMTGNCSGLA GFQSLDENLG NALLLNRSKL LRPLESFPSV 240 GTQPTLFQKR AALRKSLADK GSNLGVLSPD GGWCSNRIEG GVGKNEVGDE NAKRKMIYAD 300 ELQDTSIDTA RFNYDSDDFT ENNDTKLDES GRNVGNTSNA NSTVTGGDQK GKKKRLPAKN 360 LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELEFSPS 420 GTALTPSTSF HPLTPTPPTL SSRIKEELCP SSFPSPNGQP ARVEVRVREG RAVNIHMFCG 480 RRPGLLLSSV RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CSEGQDVHPE QIKAILLDSV 540 GFNGAT

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MLSRVGSVGW MENREDEGSA SWTNNNTHNH LNHPAANCSV LDNKDQISSL STFKSMLEVE  60
DDWCIAANAL HNHHDINGIS FSQNFTDPPD NLLLPHGDSS SSCSPSSSVF NNIDPSQLQF  120
FLPPTRTLSS LYKVIGNNPL EHGFDFGAEV GFLDVQASNT SALLSSGGGL LTGFTDLSPT  180
SQMNSPNMCL GSQLTTPNLP QMTGNCSGLA GFQSLDENLG NALLLNRSKL LRPLESFPSV  240
GTQPTLFQKR AALRKSLADK GSNLGVLSPD GGWCSNRIEG GVGKNEVGDE NAKRKMIYAD  300
ELQDTSIDTA RFNYDSDDFT ENNDTKLDES GRNVGNTSNA NSTVTGGDQK GKKKRLPAKN  360
LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELEFSPS  420
GTALTPSTSF HPLTPTPPTL SSRIKEELCP SSFPSPNGQP ARVEVRVREG RAVNIHMFCG  480
RRPGLLLSSV RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CSEGQDVHPE QIKAILLDSV  540
GFNGAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	367	KKKRLPAKNLMAERRR
2	352	370	KKKRLPAKNLMAERRRRKK
3	353	368	KKKRLPAKNLMAERRR
4	353	371	KKKRLPAKNLMAERRRRKK
5	364	371	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-100	bHLH family protein