PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542357.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 395aa MW: 44897 Da PI: 9.6605

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023542357.1 52 YVCEICHQGFQRDQNLQMHRRRH 74 9*********************9 PP
2	zf-C2H2	16.3	2.8e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023542357.1 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MVAHLSSLDP LSNCFHTNGT NSKRKRRPAG TPDPDAEVVS LSPKTLLESD SYVCEICHQG 60 FQRDQNLQMH RRRHKVPWKL LKKTETTTTT TTTRKRVFVC PEPSCLHHNP THALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 SCKLGHHQQP EKEASLQPPP PPPPPCLSRT ASSPTPTPSS DTNFSFLNQT HTPKTPQKLI 240 THHQNLDLQL STSSNSIKVS VSPKKHEIYS THLQLSIGSC NYGEKIEQKD HYQMNFDEQI 300 GNGLNLLKLK EEAKERMRVA REEKAVAEEA RNEAKKQIEL AEKELANAKR MRQQAQAELQ 360 RALALKEHAI NKINSTILQI TCQVCRQHFH PLHKT

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MVAHLSSLDP LSNCFHTNGT NSKRKRRPAG TPDPDAEVVS LSPKTLLESD SYVCEICHQG  60
FQRDQNLQMH RRRHKVPWKL LKKTETTTTT TTTRKRVFVC PEPSCLHHNP THALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
SCKLGHHQQP EKEASLQPPP PPPPPCLSRT ASSPTPTPSS DTNFSFLNQT HTPKTPQKLI  240
THHQNLDLQL STSSNSIKVS VSPKKHEIYS THLQLSIGSC NYGEKIEQKD HYQMNFDEQI  300
GNGLNLLKLK EEAKERMRVA REEKAVAEEA RNEAKKQIEL AEKELANAKR MRQQAQAELQ  360
RALALKEHAI NKINSTILQI TCQVCRQHFH PLHKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	28	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-105	C2H2 family protein