PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542328.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 160aa MW: 17802.4 Da PI: 8.4658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.6	2.2e-43	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv kll+++ +++r+da+ sl+yeAear++dPvyG+vg i+ lq+q+++l++el+ XP_023542328.1 15 PCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPVYGCVGAISCLQKQVQRLQKELD 109 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k++ XP_023542328.1 110 AAKAR 114 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MGSSSRTETS HYYSPCAACK FLRRKCIAGC VYAPYFPPED PQKFANVHKV FGASNVAKLL 60 NEVLPHQRQD AVVSLAYEAE ARIKDPVYGC VGAISCLQKQ VQRLQKELDA AKARLCLFSF 120 TDFSAPFSSQ PQIISPPMIW NSNNYDIVYA NSSMYFNGGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	2e-63	LBD family protein