PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542325.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 368aa    MW: 41413 Da    PI: 6.9233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049228250123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cg  F++   L  H+r+H
  XP_023542325.1 228 HECAICGAEFTSGQALGGHMRRH 250
                     78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MEGRKEGRME VDHEDGVMGS KEQALIAKGK RTKRPRLHSP TPFTISSNGE AGFVVLDHDH  60
DHDSNVVAEN NDFVAENNDF VAENNDYVAV PVHNVSFSPS SSSAELQPSI TTDEEEDMAN  120
CLILLAQGRP QTPKHVDNNR STVGAEKGVG IGCYGYECKT CYRTFPSFQA LGGHRASHKK  180
SKAIEAEKKV LLCSDDEEIQ FKNNMTHSIS LQLNQKGSLC SNGKGKVHEC AICGAEFTSG  240
QALGGHMRRH RAMPVAMNTA LSLTPMAMEG EDQRQPKRQR NMVSLDLDLN LPAPQEHDHH  300
RESKFMIKSN QYQQQQTQHQ TQQQTQQQTQ HQTQQQQQYK QQQQQKQQQQ QQQQPLVFPA  360
RTLVDCHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-52C2H2 family protein