PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542082.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 29386 Da    PI: 9.313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.8e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e+s
  XP_023542082.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFS 58
                    79***********************************************8 PP
2K-box912.1e-309117516100
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++  ++ +Lk+ +e +q++qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K++ l++q+ elq+ke++l e+n++Lrkklee
  XP_023542082.1  91 QSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMDQLAELQRKEHMLVEDNRSLRKKLEE 175
                     5557899***************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFSGG  60
SSMTKTLEKY RRCSYDIRDG ARHLNNNGQP QSFDDYLNLK ATVEFMQQSQ RNLLGEDLGP  120
LNAKELEQLE HQLETSLERI RSTKTRTLMD QLAELQRKEH MLVEDNRSLR KKLEESSAQV  180
AAASAAWGWE GGAGGHSMDY SSRIASQSDA FFYPITQPIP TLQIGYNSVG SVGLSNNNTH  240
NNNTNAGAPP QNGNGFQLGW ML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.16e-78MIKC_MADS family protein