PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542064.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 268aa    MW: 29211.7 Da    PI: 7.0711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016104126123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_023542064.1 104 FSCNFCKREFSTSQALGGHQNAH 126
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAEIEASSIS AASGGDDGGR PVAVKLEKMV VDEVDGGDRQ SSQEPNSRLL LDLKLSNEES  60
GEGSAEILKR IVSAPPPPPP VTVDSSSSHG HANELSSNSK SRVFSCNFCK REFSTSQALG  120
GHQNAHKQER AMAKRCQGME LGGGRPPYLA SYYPYTALSS HSFYGSSLGV RMDSMIHKSS  180
YRWLKSPGLQ FHGSLASRPT VNNLRISAFQ AQNGGFRLTT MMNNNVESTR RFDEDRAILI  240
PNLNLSEPVL KIEHHVDDGH ELDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-19C2H2 family protein