PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541938.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 634aa MW: 67372.7 Da PI: 9.4955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023541938.1 75 FICEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.4	0.00049	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023541938.1 151 WKCDKCSKRYAVQSDWKAHSKTC 173 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MAASSSSVPL FGSRDEAQMR QQQQQQQQQQ QQQQQQSNSS GVAPPKKKRN QPGTPNPDAE 60 VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKSNKE PKRKVYLCPE 120 PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARHP TNLGSAMGGH LYGGNSNVGL TLSQVPQMSS 240 LQDIPNITQS DVLRLGGGGR TGQFNHLLPP SIGSSFRPPP QQAMPSSAAA AAFFLNDQTS 300 QNSFHEDHGS QSQQGLFGNK AFHGLMQFSD MQSHTSNSNN PSSNLFNLGF ISNPTGDSTT 360 NMNNNNNTNS NNTSNSNNNS NSNNNNLQSS LLNQFNGTNN GNNEGGGASN IFSMMGDQMN 420 SGAVPSLYSN TTGVGGSGTS GAIPHMSATA LLQKAAQLGS TTSSSNTTAT LLRSFGSSST 480 SGGKASDRTL FPPSYGGVFG ENESNLQDLM NSFTTGNSTG GLFGGGMSSF GTFDGGNNRP 540 NNMETLEDPK LQQNLSSVSM GGTDRLTRDF LGVGQIVRSM SSGGGGGGGG GGGGGGYSQR 600 EHKQPPQGIV MEGNESNSAA SSQAFGGGGN GNYQ

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MAASSSSVPL FGSRDEAQMR QQQQQQQQQQ QQQQQQSNSS GVAPPKKKRN QPGTPNPDAE  60
VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKSNKE PKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARHP TNLGSAMGGH LYGGNSNVGL TLSQVPQMSS  240
LQDIPNITQS DVLRLGGGGR TGQFNHLLPP SIGSSFRPPP QQAMPSSAAA AAFFLNDQTS  300
QNSFHEDHGS QSQQGLFGNK AFHGLMQFSD MQSHTSNSNN PSSNLFNLGF ISNPTGDSTT  360
NMNNNNNTNS NNTSNSNNNS NSNNNNLQSS LLNQFNGTNN GNNEGGGASN IFSMMGDQMN  420
SGAVPSLYSN TTGVGGSGTS GAIPHMSATA LLQKAAQLGS TTSSSNTTAT LLRSFGSSST  480
SGGKASDRTL FPPSYGGVFG ENESNLQDLM NSFTTGNSTG GLFGGGMSSF GTFDGGNNRP  540
NNMETLEDPK LQQNLSSVSM GGTDRLTRDF LGVGQIVRSM SSGGGGGGGG GGGGGGYSQR  600
EHKQPPQGIV MEGNESNSAA SSQAFGGGGN GNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.1	1e-117	C2H2 family protein