PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541474.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 552aa MW: 60823.1 Da PI: 8.0842

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.3	1.9e-42	177	253	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+q XP_023541474.1 177 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQV 253 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MESWNYGSQG KGFLSDEMNS STNSLLKSKY SLLGWEFKNP CSFGDNILLS GGAQHVENQS 60 FGELEFPLMV GKQLPDDSFS DVLNTKIDGG RSLNLVLPTS HPLPGEEEST SKLSGSIVDS 120 NNRDSSLIDL KLGRFIDTGD AHSFKYSKRA AISSSTESST SYKKMRSQGV NFLTPFCQVY 180 GCNKDLSSSK DYHKRHKVCE VHSKTSKVIV NGIEQRFCQQ CSRFHLLSEF DDGKRSCRKR 240 LAGHNERRRK PQVSFHSGRA QRLLQPYNGN GDRRFQEKAL GATSFICKDI LSSGVYYPEK 300 LGKNDWCKRI KVEGKNDYNS MCATSVGDRL LNMKSPLLPY DFEVQIPCFQ GNGSNAAVTE 360 NMLCDTSCQY SHNVGGLHMD THPLFHHTNL SSENFGVYDA ASTIQGVSGN PDYGCALSLL 420 SSHSQNASTH PSIVHVPRAF TMSKSRSNYS MSELSEKLMG VSSQASSTGI SSKFASGMSE 480 AQMVPIMTGE SSDHSVTFQI TDGVLHGSGL GNAKANLSYE HTPTMDLLQL SSQLHRVEHQ 540 RHSMQVHGGL CK

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MESWNYGSQG KGFLSDEMNS STNSLLKSKY SLLGWEFKNP CSFGDNILLS GGAQHVENQS  60
FGELEFPLMV GKQLPDDSFS DVLNTKIDGG RSLNLVLPTS HPLPGEEEST SKLSGSIVDS  120
NNRDSSLIDL KLGRFIDTGD AHSFKYSKRA AISSSTESST SYKKMRSQGV NFLTPFCQVY  180
GCNKDLSSSK DYHKRHKVCE VHSKTSKVIV NGIEQRFCQQ CSRFHLLSEF DDGKRSCRKR  240
LAGHNERRRK PQVSFHSGRA QRLLQPYNGN GDRRFQEKAL GATSFICKDI LSSGVYYPEK  300
LGKNDWCKRI KVEGKNDYNS MCATSVGDRL LNMKSPLLPY DFEVQIPCFQ GNGSNAAVTE  360
NMLCDTSCQY SHNVGGLHMD THPLFHHTNL SSENFGVYDA ASTIQGVSGN PDYGCALSLL  420
SSHSQNASTH PSIVHVPRAF TMSKSRSNYS MSELSEKLMG VSSQASSTGI SSKFASGMSE  480
AQMVPIMTGE SSDHSVTFQI TDGVLHGSGL GNAKANLSYE HTPTMDLLQL SSQLHRVEHQ  540
RHSMQVHGGL CK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-50	SBP family protein