PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541422.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1501aa MW: 164740 Da PI: 7.6059

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.6e-10	923	963	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE ++ +av +G++ ++ I+r++g +++ qck ++ XP_023541422.1 923 SWTDEEKSIFMQAVSSYGKD-FDMISRCVG-SKSRDQCKVFFS 963 7***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1501 aa Download sequence
MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKQGG 60 WHQFSEEASH GYGPSRSFSD RVVENESFRP SVPRGDGKYI RIGRESRGSS SYRDWRSYSR 120 ETTNGFGNPS RRPSSQDVSS DQRSVDDTTT HSSPQSDVVS VSDQIHSKDR NDKVGGAFGS 180 ENGLRSDVEV SLGSTDWKPL KWSRSGSLSS RASAYSSSTN SKNEKADLPL RVSSLIESSS 240 AEATACVTSS LPFEDTISKK KPRLGWGDGL AKFEKYKVEA PDTNCASPAT PSSFACSSSS 300 GLEDKPFSKA ASVDGMKCSS PGSGSQNQLQ NFFLSLEKLE ISSIAKIGSS LVELFQSDDP 360 NTVESCFGKS TLNKLLAYKS DISKTLEMTE SEIDLLENEL KSLKSKNRGN VSRSKSCSAI 420 YVKESDGVSC ISPRPASLKV VSTSDSTVEK MPVCKNVVGV EDVDTKDEEI DSPGTVMSKF 480 NEPIRTEVTD VIVSDKTGRS LSISEPFVDE RNECIRAKSC TGESICGDSM AQAASGSSLC 540 DLIFASNKEY ASKAAEVIFG SLPAEMFKIS SQSTNFVPCS ETEKLIKEKF LMRRQFLKFK 600 ESALTLRFKA LQHSWKEGLL HSVKKCRSKP QKKELSLRVT YSGHQKYRSS IRSRVVQHGA 660 CQNRASNSEI ATRYSSKLLS NPRVRRYRNI LKMPAMILDK NEKTALRFVS NNGLVEDPCA 720 VEKERSMINP WSLAERELFW EKLSLFGKDF RKISSFLSHK TTADCIQFYY KNHKSDSFKK 780 RKNLDLGKQM KSSTMTYMLT SGKKWNPGVN ATSLDILGVA SVMAAQEDSN IGTQLTCARH 840 FDELQSEKET VAADVLVGIC GSISSEPMSS CITSAIHPSE DYREPKCHKV DSATKLPSMS 900 DAMQRTDNEP CSDDSSGDVD SSSWTDEEKS IFMQAVSSYG KDFDMISRCV GSKSRDQCKV 960 FFSKARKCLG LDLIRTSEDV GTPRSGNDAS GSGTDSEAHY VVEGARSSEE IGSKSVDGFS 1020 EFGESTAFQQ SEAKRAEAVR NLFSETSKEV EEDAPNLDSH SACNLANARA SPSQPKPVHD 1080 HKIEGSSENT EAGSNRCNEP NVLRSESMST VDENSTAISE SGAVMKLAFG EEKGSNSNLH 1140 AQSILQCLVQ DSSGIDPQIS HPNFLKVDSV EKSCKLEVRD APKRPMNRDG YAERENHLLR 1200 HVGSSEFPCS HPFNKPIIED MNRTINHTSF PVVRALSKPD INCNSTYVAE EQECRLQNCN 1260 SSKPCHRSAE LPFSPPNVEF GHDHRKNTSR SGSASDSDVP CRKGDVKLFG QILSHAPSQQ 1320 NSSSGSNECG TKKGLHKSSS TYDMGENAPS RSYGFWDGNG LQTGLSAMPD SIVLQAKYPA 1380 AFSGYAATSV KTEQQPLLTL TKNDDQAYKT VDGVKKRPYP VDIFSEIHRR NGFDSLSLAS 1440 LQQQGRMLVG MNVVGRGGIV VGNSCTGISD PVAAIKMHYA KADQYVDGSW RGGNGDIGSS 1500 R

Sequence ? help Back to Top

Protein Sequence Length: 1501 aa Download sequence

MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKQGG  60
WHQFSEEASH GYGPSRSFSD RVVENESFRP SVPRGDGKYI RIGRESRGSS SYRDWRSYSR  120
ETTNGFGNPS RRPSSQDVSS DQRSVDDTTT HSSPQSDVVS VSDQIHSKDR NDKVGGAFGS  180
ENGLRSDVEV SLGSTDWKPL KWSRSGSLSS RASAYSSSTN SKNEKADLPL RVSSLIESSS  240
AEATACVTSS LPFEDTISKK KPRLGWGDGL AKFEKYKVEA PDTNCASPAT PSSFACSSSS  300
GLEDKPFSKA ASVDGMKCSS PGSGSQNQLQ NFFLSLEKLE ISSIAKIGSS LVELFQSDDP  360
NTVESCFGKS TLNKLLAYKS DISKTLEMTE SEIDLLENEL KSLKSKNRGN VSRSKSCSAI  420
YVKESDGVSC ISPRPASLKV VSTSDSTVEK MPVCKNVVGV EDVDTKDEEI DSPGTVMSKF  480
NEPIRTEVTD VIVSDKTGRS LSISEPFVDE RNECIRAKSC TGESICGDSM AQAASGSSLC  540
DLIFASNKEY ASKAAEVIFG SLPAEMFKIS SQSTNFVPCS ETEKLIKEKF LMRRQFLKFK  600
ESALTLRFKA LQHSWKEGLL HSVKKCRSKP QKKELSLRVT YSGHQKYRSS IRSRVVQHGA  660
CQNRASNSEI ATRYSSKLLS NPRVRRYRNI LKMPAMILDK NEKTALRFVS NNGLVEDPCA  720
VEKERSMINP WSLAERELFW EKLSLFGKDF RKISSFLSHK TTADCIQFYY KNHKSDSFKK  780
RKNLDLGKQM KSSTMTYMLT SGKKWNPGVN ATSLDILGVA SVMAAQEDSN IGTQLTCARH  840
FDELQSEKET VAADVLVGIC GSISSEPMSS CITSAIHPSE DYREPKCHKV DSATKLPSMS  900
DAMQRTDNEP CSDDSSGDVD SSSWTDEEKS IFMQAVSSYG KDFDMISRCV GSKSRDQCKV  960
FFSKARKCLG LDLIRTSEDV GTPRSGNDAS GSGTDSEAHY VVEGARSSEE IGSKSVDGFS  1020
EFGESTAFQQ SEAKRAEAVR NLFSETSKEV EEDAPNLDSH SACNLANARA SPSQPKPVHD  1080
HKIEGSSENT EAGSNRCNEP NVLRSESMST VDENSTAISE SGAVMKLAFG EEKGSNSNLH  1140
AQSILQCLVQ DSSGIDPQIS HPNFLKVDSV EKSCKLEVRD APKRPMNRDG YAERENHLLR  1200
HVGSSEFPCS HPFNKPIIED MNRTINHTSF PVVRALSKPD INCNSTYVAE EQECRLQNCN  1260
SSKPCHRSAE LPFSPPNVEF GHDHRKNTSR SGSASDSDVP CRKGDVKLFG QILSHAPSQQ  1320
NSSSGSNECG TKKGLHKSSS TYDMGENAPS RSYGFWDGNG LQTGLSAMPD SIVLQAKYPA  1380
AFSGYAATSV KTEQQPLLTL TKNDDQAYKT VDGVKKRPYP VDIFSEIHRR NGFDSLSLAS  1440
LQQQGRMLVG MNVVGRGGIV VGNSCTGISD PVAAIKMHYA KADQYVDGSW RGGNGDIGSS  1500
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-96	MYB family protein