PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023541268.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | RAV | ||||||||
Protein Properties | Length: 326aa MW: 36133.9 Da PI: 10.1125 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.5e-12 | 49 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f + +Aaka++ a+++++g XP_023541268.1 49 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNHEHQAAKAYDIAALRFRG 97 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 94.9 | 5.3e-30 | 177 | 273 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g+ +++++ l +ed g+ W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++ ++ XP_023541268.1 177 FEKTVTPSDVGKLNRLVIPKQHAEKNfplgeGMGSTKGILLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDK 271 99*****************************6667899*************************************************97655665 PP .. CS B3 91 el 92 +l XP_023541268.1 272 KL 273 55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence |
MDTTSSLDDS AASDSTSVSP VTPLLFHSSS SSCPPGVPYD AESRKLPSSR FKGVVPQPNG 60 RWGAQIYEKH QRVWLGTFNH EHQAAKAYDI AALRFRGRDA VTNFKPGAFS SVDAAFEADF 120 LNSHSKLEIV DMLRKHTYND EIQQSKRYGG GTTTTTTAAA AHSLQNAASE SDREVLFEKT 180 VTPSDVGKLN RLVIPKQHAE KNFPLGEGMG STKGILLNFE DMGGKLWRFR YSYWNSSQSY 240 VLTKGWSRFV KEKTLRAGDV VRFLRSTGPD KKLYIDGKPG GVKAVQVVKL FGVNILEVPV 300 GWCGKRDREG LSELERTKKQ RIVKAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-117 | RAV family protein |