PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541249.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 286aa MW: 30437.1 Da PI: 9.3116

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.7	3.8e-57	96	264	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel...kskkqsalsst 89 a C+dCGn+akk+C+++RCRtCCk rg +C+thvkstWvpa++rrerq + +a+ ++a +kr+r l +s+ +a+s++ XP_023541249.1 96 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDggssgsSSAGAKRPRVLipsQSTPPAAASHA 190 5679*******************************************9877665544444445666767788889998866545555566666 PP DUF702 90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + s a++++++et+s lP +v+++avfr rv++++ ge elaYq++v+igGhvfkG+LydqG+ XP_023541249.1 191 SASIATTSRSFETTSnhqdasfkksLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVV 264 7777777777777777888999999*********************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MLGLRDVLFL APTSTSDHHP SLPLHSPAAL GVSVGIFPLL AATPSLPPPP QPPNQTAEEV 60 SDRTRSLENL KKTHDFGFGK GDSFIAGDKG DAGESSMAVC RDCGNRAKKE CEYRRCRTCC 120 KGRGNHCSTH VKSTWVPASR RRERQMLVVM DGVATASGDG GSSGSSSAGA KRPRVLIPSQ 180 STPPAAASHA SASIATTSRS FETTSNHQDA SFKKSLPGQV RAPAVFRYHR VTAISSGEGE 240 LAYQATVNIG GHVFKGFLYD QGVVDHKNGY PSLSHLHLES GSHHRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-46	SRS family protein