PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023541228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 783aa MW: 86930 Da PI: 5.8836 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 87 | 142 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+ +qVk+WFqNrR+++k XP_023541228.1 87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMK 142 7999*************************************************999 PP | |||||||
2 | START | 167.4 | 1e-52 | 297 | 517 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ + p+W +s e +n e+ ++f++s + ++ea r++++v+ +++ l e+l+d + +W e+++ +a+t+ XP_023541228.1 297 LALAAMDELVKMAQIDTPLWIRSQdssgkETLNFNEYSRTFPSSAAmkhtnWTTEATRDTTMVIINSMALIETLMDAN-RWAEMFPcliaRATTI 390 6899********************9999999999*******99888999999**************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vis+g g lqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + +++lpSg+++++++ng skvtwveh+ XP_023541228.1 391 DVISNGmggtrnGSLQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSLGEGADAD---MFFSCRRLPSGCIVQDMPNGFSKVTWVEHT 482 ************************************************************87...5***************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r++++ g+ +g ++w+atlqrqc XP_023541228.1 483 EYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCD 517 *********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence |
MPNGAVADPT FLAFPIPCSL PNSSEFSNSI GKMDGYREAC LLGDSFDPNG VVRMREDEYD 60 SRSGSDNIDG AVSGDDQDAN DEQRRKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRSELS 120 RRLGLESKQV KFWFQNRRTQ MKTQIERHEN AILKHENDKL RAENSVMKDA ISNPTCNTCG 180 GPSIPVHLSF EEHQLRIDNA RLRDELHRLY TVTNKFLGWP VLPFVNHSSS VSSDSCLELS 240 VGRNGMGNLS NISDPMPMGL NLGNGLFNGG PVMPISKSQM GMPGNDIPID RTIYVDLALA 300 AMDELVKMAQ IDTPLWIRSQ DSSGKETLNF NEYSRTFPSS AAMKHTNWTT EATRDTTMVI 360 INSMALIETL MDANRWAEMF PCLIARATTI DVISNGMGGT RNGSLQLMHA ELRVLSPLVP 420 VRTLKFLRFC KQHADGLWAV VDVSLGEGAD ADMFFSCRRL PSGCIVQDMP NGFSKVTWVE 480 HTEYDETVVH QLYRQIISWG IGFGSQRWLA TLQRQCDCLA ILMSSTEDPA GISPHGRRSM 540 LKLSQRMVDN FCSGICTSTL QKWDKLVVGN ISEDVKMMAR NSINDPGEPP GIVLSAATSV 600 WMPVTQQRLF AFLQDECLRS EWDILSNGRP MIEMLRISKG QGLDNRVSLL RANPMNANEN 660 TMLILQESWT DISGSLIVYA PVDAASVNLV MRGGDSAYVS LLPSGFAILP DGPSNYASTN 720 NDKDGPIMSD INSGYAGGCL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTIQKIKVAL 780 RVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |