PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023541228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 783aa    MW: 86930 Da    PI: 5.8836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023541228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.9e-2187142156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+ +qVk+WFqNrR+++k
  XP_023541228.1  87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMK 142
                     7999*************************************************999 PP

2START167.41e-522975172205
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la++a++elvk+a+ + p+W +s      e +n  e+ ++f++s +      ++ea r++++v+ +++ l e+l+d + +W e+++    +a+t+
  XP_023541228.1 297 LALAAMDELVKMAQIDTPLWIRSQdssgkETLNFNEYSRTFPSSAAmkhtnWTTEATRDTTMVIINSMALIETLMDAN-RWAEMFPcliaRATTI 390
                     6899********************9999999999*******99888999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis+g      g lqlm ael +lsplvp R   f+R+++q+ +g w++vdvS+ + ++      +  +++lpSg+++++++ng skvtwveh+
  XP_023541228.1 391 DVISNGmggtrnGSLQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSLGEGADAD---MFFSCRRLPSGCIVQDMPNGFSKVTWVEHT 482
                     ************************************************************87...5***************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++ ++h+l+r++++ g+ +g ++w+atlqrqc 
  XP_023541228.1 483 EYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCD 517
                     *********************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    
MPNGAVADPT FLAFPIPCSL PNSSEFSNSI GKMDGYREAC LLGDSFDPNG VVRMREDEYD  60
SRSGSDNIDG AVSGDDQDAN DEQRRKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRSELS  120
RRLGLESKQV KFWFQNRRTQ MKTQIERHEN AILKHENDKL RAENSVMKDA ISNPTCNTCG  180
GPSIPVHLSF EEHQLRIDNA RLRDELHRLY TVTNKFLGWP VLPFVNHSSS VSSDSCLELS  240
VGRNGMGNLS NISDPMPMGL NLGNGLFNGG PVMPISKSQM GMPGNDIPID RTIYVDLALA  300
AMDELVKMAQ IDTPLWIRSQ DSSGKETLNF NEYSRTFPSS AAMKHTNWTT EATRDTTMVI  360
INSMALIETL MDANRWAEMF PCLIARATTI DVISNGMGGT RNGSLQLMHA ELRVLSPLVP  420
VRTLKFLRFC KQHADGLWAV VDVSLGEGAD ADMFFSCRRL PSGCIVQDMP NGFSKVTWVE  480
HTEYDETVVH QLYRQIISWG IGFGSQRWLA TLQRQCDCLA ILMSSTEDPA GISPHGRRSM  540
LKLSQRMVDN FCSGICTSTL QKWDKLVVGN ISEDVKMMAR NSINDPGEPP GIVLSAATSV  600
WMPVTQQRLF AFLQDECLRS EWDILSNGRP MIEMLRISKG QGLDNRVSLL RANPMNANEN  660
TMLILQESWT DISGSLIVYA PVDAASVNLV MRGGDSAYVS LLPSGFAILP DGPSNYASTN  720
NDKDGPIMSD INSGYAGGCL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTIQKIKVAL  780
RVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein