PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541167.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 450aa MW: 48687.7 Da PI: 7.2145

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.2	1e-36	95	247	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.eaesss 79 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGf ++sk++eWL+++a ai el+++ +++s+ e+ +++ + XP_023541167.1 95 SGGKDRHSKVWTSKGLRDRRVRLSVPTAIQFYDLQDRLGFEQPSKAVEWLIEAAADAIAELPSLhgafsdekmgsdgtdqGFDSP-EMeLDGDTK 188 689***********************************************************999999999888665544444.234566666 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 + ++n++ + + +a+s+ s++s+ s l+l++ rakar rarert++++ +++ XP_023541167.1 189 KHQQNQRRMLSLARSACSSTSETSKGSGLSLSRseilVNRAKARDRARERTAKEKEKEQ 247 6666666666666666777777777777777775455778*******9988877664 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MEVVEIQEQP CRFSRIGNRG NESNKLGQKG IVHSPEDEEI KEFSKRVAVV ASASVSATAG 60 GVEPGGCGGN GGGGGVNRLR GWHHSSRIIR VARASGGKDR HSKVWTSKGL RDRRVRLSVP 120 TAIQFYDLQD RLGFEQPSKA VEWLIEAAAD AIAELPSLHG AFSDEKMGSD GTDQGFDSPE 180 MELDGDTKKH QQNQRRMLSL ARSACSSTSE TSKGSGLSLS RSEILVNRAK ARDRARERTA 240 KEKEKEQESI PNNQSFTELL TGGGATTNRT SSAPENTAVE PNLFDKATAM DYLTSSGIIG 300 QEPSSSSSSR PGHNQSAGFS GQIFLGNPHQ LPMSVPQFNV SAGENTQQDR LQHFSFVPDN 360 LNDYNLNFTI SAGLAGCNRG TLQSNISPSL LPYLQRFPHD GSNLPFFIGA PSPATTPVQL 420 ENHQHLFDGS WQLCYADGTH HSDQKGKGKN

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MEVVEIQEQP CRFSRIGNRG NESNKLGQKG IVHSPEDEEI KEFSKRVAVV ASASVSATAG  60
GVEPGGCGGN GGGGGVNRLR GWHHSSRIIR VARASGGKDR HSKVWTSKGL RDRRVRLSVP  120
TAIQFYDLQD RLGFEQPSKA VEWLIEAAAD AIAELPSLHG AFSDEKMGSD GTDQGFDSPE  180
MELDGDTKKH QQNQRRMLSL ARSACSSTSE TSKGSGLSLS RSEILVNRAK ARDRARERTA  240
KEKEKEQESI PNNQSFTELL TGGGATTNRT SSAPENTAVE PNLFDKATAM DYLTSSGIIG  300
QEPSSSSSSR PGHNQSAGFS GQIFLGNPHQ LPMSVPQFNV SAGENTQQDR LQHFSFVPDN  360
LNDYNLNFTI SAGLAGCNRG TLQSNISPSL LPYLQRFPHD GSNLPFFIGA PSPATTPVQL  420
ENHQHLFDGS WQLCYADGTH HSDQKGKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	2e-51	TCP family protein