PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541077.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 402aa MW: 45347.9 Da PI: 5.4571

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	8.2e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C H+ H++v XP_023541077.1 17 ARACDSCISKRARWYCAADDAFLCQACDALVHSAnslarrHERV 60 578**************************999657788888876 PP
2	CCT	67.2	4.4e-23	347	390	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ XP_023541077.1 347 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 390 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MTTRKSVEKT AEGGKTARAC DSCISKRARW YCAADDAFLC QACDALVHSA NSLARRHERV 60 RLQTASFRPS SDKSSAASWH QGFTRKPRSP RMGKAALARK PSPQVPEVNA KEETEDQEQL 120 FLHRVPVLGA DSNVGDLASF VGEKENSNGY LSYDMDPAEF AADVESLLGN SLDTECFDME 180 ELGLGASQDD WTTKDDSSFN SCEVIKIEPD EIEELTPMML GVETDPMREP FDLNFMDFSD 240 NPSCDKEEKT IVEVMALAKN REFEVEEETK IARNKKKVSL SLDSEAVIIA WGSRGTPWTS 300 GERPNVDLDY YWPDYMGMCE SGHYYQAYGE VGGGIRRQAA AGVEGEREAR VSRYREKRRT 360 RLFAKKIRYE VRKLNAEKRP RMKGRFVKRS SCFAPPPFPL FN

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MTTRKSVEKT AEGGKTARAC DSCISKRARW YCAADDAFLC QACDALVHSA NSLARRHERV  60
RLQTASFRPS SDKSSAASWH QGFTRKPRSP RMGKAALARK PSPQVPEVNA KEETEDQEQL  120
FLHRVPVLGA DSNVGDLASF VGEKENSNGY LSYDMDPAEF AADVESLLGN SLDTECFDME  180
ELGLGASQDD WTTKDDSSFN SCEVIKIEPD EIEELTPMML GVETDPMREP FDLNFMDFSD  240
NPSCDKEEKT IVEVMALAKN REFEVEEETK IARNKKKVSL SLDSEAVIIA WGSRGTPWTS  300
GERPNVDLDY YWPDYMGMCE SGHYYQAYGE VGGGIRRQAA AGVEGEREAR VSRYREKRRT  360
RLFAKKIRYE VRKLNAEKRP RMKGRFVKRS SCFAPPPFPL FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	374	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	9e-84	CO-like family protein