PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540844.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 395aa    MW: 45498 Da    PI: 7.3617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.22.8e-120293941373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                     +++lL++cA+++s++d+  a++lL+ ls ++sp+gd+++Rl +yft  L++r+ +s s+ +  lp+ ++ ++++++ +++  l +++++P+++f+
  XP_023540844.1  29 MRQLLIRCAHFISQSDFLSAHRLLSILSSNSSPYGDATERLLHYFTTSLSHRIPSSNSSSVLPLPSLSSIDDEQQKLTQSCYLsLNQITPFIRFT 123
                     589****************************************************77776666666655544444444443336*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.r 185
                     hltaNqaIlea+  e  +H++Dfdi++G+QWp+L+qaLa+R  ++p+lRi ++g+    + + l++tg+rL+kfA++lg++f+f++l     + +
  XP_023540844.1 124 HLTANQAILEAIV-EGGIHVVDFDIMHGVQWPPLMQALAER-FPSPMLRISAIGR----DLNFLHKTGDRLSKFAHSLGLRFQFHPLlllN-DhD 211
                     ***********96.678***********************9.788**********....9**************************97633.347 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      + l + +L + p+Eala n+vl lh+l++e        + +L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea+lp++s+
  XP_023540844.1 212 HHRLIPAALTLFPDEALAFNCVLYLHKLVKE------DLRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSR 300
                     88899***********************933......34569***************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er  vE++++grei +vv+ eg++r++r e++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl+lgW++rpL+svS+W
  XP_023540844.1 301 ERLAVEQVWFGREIDDVVSREGNKRKQRYERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNRPLFSVSSW 394
                     ********************************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MLMASHHYEH NHHHQEEETT SSSNNSLQMR QLLIRCAHFI SQSDFLSAHR LLSILSSNSS  60
PYGDATERLL HYFTTSLSHR IPSSNSSSVL PLPSLSSIDD EQQKLTQSCY LSLNQITPFI  120
RFTHLTANQA ILEAIVEGGI HVVDFDIMHG VQWPPLMQAL AERFPSPMLR ISAIGRDLNF  180
LHKTGDRLSK FAHSLGLRFQ FHPLLLLNDH DHHRLIPAAL TLFPDEALAF NCVLYLHKLV  240
KEDLRVLLHK IKALNPKVVT IAEKEANFNH PLFMQRFLEA LNHYSLIFDS LEATLPPNSR  300
ERLAVEQVWF GREIDDVVSR EGNKRKQRYE RYESWETMLK SLGFSNIPLS PFALSQAKLL  360
LRLHYPSEGY HLQILHDSLF LGWQNRPLFS VSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-124GRAS family protein