PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540796.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 494aa MW: 54439.7 Da PI: 6.3167

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.7	8.6e-07	13	51	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_023540796.1 13 PCDFCNEQVAILYCRADSAKLCLFCDNHVHSAnllsrkH 51 6***************************99545555556 PP
2	zf-B_box	17.7	7.3e-06	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC++C H + H+++p+ XP_023540796.1 54 SQICDNCRCEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHDRTPI 99 689*************************999954889999988876 PP
3	CCT	61.7	2.4e-21	446	488	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk+ XP_023540796.1 446 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKA 488 7789*************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MVCSKFTTGG SVPCDFCNEQ VAILYCRADS AKLCLFCDNH VHSANLLSRK HVRSQICDNC 60 RCEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFSGCPSALE LVSLWGFDLG 120 DKKLEESEML VRNWGSSQDL VMQIDSWACR ASATAFNDLI VPNENPFLFA NINCTDAAST 180 LKKQSPSCGK HKQVIYKQLV ELLKRDFQGG DDGGNTADGD AGGEDNGLEN LVPETTNGDC 240 YWQGDLEARR IEKGDDGVFA DVTAAPQPSL QQQTSFTSLL TMPPHMGLKD SERIVDDTSG 300 WDSNPNRQSI QIWDFHLGQL RGHKDSNSFD DAYGTSNMGF TIKNFGDFLK ETSPTCTKLL 360 GETYQINGSG MHDDLPSLNG HVNNSTPSHR AATCESNNLP NGTTCSKLKG SSKNAQPIEQ 420 QPIIVRDGIL STSTTKADLE LLAENRGNAM QRYKEKRKTR RYDKYIRYES RKARADTRKR 480 VKGRFVKATG GHAC

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MVCSKFTTGG SVPCDFCNEQ VAILYCRADS AKLCLFCDNH VHSANLLSRK HVRSQICDNC  60
RCEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFSGCPSALE LVSLWGFDLG  120
DKKLEESEML VRNWGSSQDL VMQIDSWACR ASATAFNDLI VPNENPFLFA NINCTDAAST  180
LKKQSPSCGK HKQVIYKQLV ELLKRDFQGG DDGGNTADGD AGGEDNGLEN LVPETTNGDC  240
YWQGDLEARR IEKGDDGVFA DVTAAPQPSL QQQTSFTSLL TMPPHMGLKD SERIVDDTSG  300
WDSNPNRQSI QIWDFHLGQL RGHKDSNSFD DAYGTSNMGF TIKNFGDFLK ETSPTCTKLL  360
GETYQINGSG MHDDLPSLNG HVNNSTPSHR AATCESNNLP NGTTCSKLKG SSKNAQPIEQ  420
QPIIVRDGIL STSTTKADLE LLAENRGNAM QRYKEKRKTR RYDKYIRYES RKARADTRKR  480
VKGRFVKATG GHAC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-111	CO-like family protein