PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540716.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 366aa MW: 40279.3 Da PI: 9.6821

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	54	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+ aLi+ +r+++ +lrrg+lk+++W+ev++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f+q++a XP_023540716.1 54 CWTHDETIALIDSYRDKWYSLRRGNLKATHWQEVADSVshrcPNASPPKTAVQCRHKMEKLRKRYRTELQRARSMpLSRFTSSWVHFKQMDA 145 8*******************************99996665666778999*******************977999********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MVSSAMDSPS SPNDGSPPSN PLQPLPISTP LPLPSNPPPQ PVASASSRRL PPPCWTHDET 60 IALIDSYRDK WYSLRRGNLK ATHWQEVADS VSHRCPNASP PKTAVQCRHK MEKLRKRYRT 120 ELQRARSMPL SRFTSSWVHF KQMDAMEKGP SAKPDESDTG GEEDDEDEED DQELYEEFRN 180 AGASAARSVR KLYGNGITSG GSNTGGGGNG GDGAAAGGFR IRIPTGVSIA QPGLKNYPKA 240 EHKMNPNPNS NPNSGTNMNP AAVNFGTRVV RESNPVRPAT GKRGERERER DPVTEMVSAI 300 KALGDGFVRM ERMKMEMARE IEAMRMDMEI KRTEMILDSQ QRIVEAFAKA VSENKKKIKR 360 IPSPGS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MVSSAMDSPS SPNDGSPPSN PLQPLPISTP LPLPSNPPPQ PVASASSRRL PPPCWTHDET  60
IALIDSYRDK WYSLRRGNLK ATHWQEVADS VSHRCPNASP PKTAVQCRHK MEKLRKRYRT  120
ELQRARSMPL SRFTSSWVHF KQMDAMEKGP SAKPDESDTG GEEDDEDEED DQELYEEFRN  180
AGASAARSVR KLYGNGITSG GSNTGGGGNG GDGAAAGGFR IRIPTGVSIA QPGLKNYPKA  240
EHKMNPNPNS NPNSGTNMNP AAVNFGTRVV RESNPVRPAT GKRGERERER DPVTEMVSAI  300
KALGDGFVRM ERMKMEMARE IEAMRMDMEI KRTEMILDSQ QRIVEAFAKA VSENKKKIKR  360
IPSPGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-76	Trihelix family protein