PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023540668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22533.5 Da PI: 8.6682 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.4e-19 | 78 | 127 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg++ tae+Aa+a+++a+ +++g XP_023540668.1 78 KYRGIRRRP-WGKWAAEIRDPH----KgYRVWLGTYNTAEDAARAYDQAAIRIRG 127 8********.**********72....35*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MCGGAMASDF VQPKSSGKSV VDNHLWPQLD TFSDLSGKTD PNNPANGLEI QSRLSQGEKP 60 EEFEAGEKEK VKRVRKNKYR GIRRRPWGKW AAEIRDPHKG YRVWLGTYNT AEDAARAYDQ 120 AAIRIRGKKA KLNFTHPPPP PPPSPPLPLQ PQPLATPTDV ELKDQISRLE SFLCLDPEPT 180 PDLWWVDELL AYQDQNRIL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 86 | KRVRKNKYRGIRRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-24 | ERF family protein |