PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540455.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 520aa MW: 57058.5 Da PI: 4.9806

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114	1e-35	36	126	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_023540455.1 36 FLSKTYDMVDDPATDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHKHLLKS 121 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i r++ XP_023540455.1 122 ITRRR 126 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MDGNANGGEA GLTSGSGSSH PTVPPPITNA NAPPPFLSKT YDMVDDPATD AVVSWSSTNN 60 SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGHKHLLK 120 SITRRRPVHG HSQQQPQQSH GQSSSVGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ 180 QQQTTDNQLQ TMVQRLQGME QRQQQMMSFL AKAVQSPGFL AQFVQQQNES TRRISEANKK 240 RRLKQDGIAE SEHTTVPDGQ IVKYQPLMNE AAKAMLRQIM KIDTSHLEPL NHNTDSFLIS 300 DGLPSSCAAM DNGNSSTSVS GVTLQEVPPT SGASSFNSAA SGIASHGPST AISEIHSSPQ 360 ATTSDKVSTT PFSVNAVRGP GAREASSLPV SETDVIMSEL SQISEMVSEN IIDAPEADYR 420 AAETGNGAFS GLSLLEAANI PIEIDSISPD PDIDALLDNS NFWNDLLVHS PCQEEEVDFL 480 TGGLPKTNEM QPLENMWDKS KHVDKLTEQM DLLTSEIKRV

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MDGNANGGEA GLTSGSGSSH PTVPPPITNA NAPPPFLSKT YDMVDDPATD AVVSWSSTNN  60
SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGHKHLLK  120
SITRRRPVHG HSQQQPQQSH GQSSSVGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ  180
QQQTTDNQLQ TMVQRLQGME QRQQQMMSFL AKAVQSPGFL AQFVQQQNES TRRISEANKK  240
RRLKQDGIAE SEHTTVPDGQ IVKYQPLMNE AAKAMLRQIM KIDTSHLEPL NHNTDSFLIS  300
DGLPSSCAAM DNGNSSTSVS GVTLQEVPPT SGASSFNSAA SGIASHGPST AISEIHSSPQ  360
ATTSDKVSTT PFSVNAVRGP GAREASSLPV SETDVIMSEL SQISEMVSEN IIDAPEADYR  420
AAETGNGAFS GLSLLEAANI PIEIDSISPD PDIDALLDNS NFWNDLLVHS PCQEEEVDFL  480
TGGLPKTNEM QPLENMWDKS KHVDKLTEQM DLLTSEIKRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	245	NKKRRLKQ
2	239	244	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-121	HSF family protein