PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540445.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 494aa MW: 54958.6 Da PI: 6.7666

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101	6.9e-32	138	195	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++v+i+Y+g+H+h+k XP_023540445.1 138 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIVDIIYKGTHDHPK 195 8**************************************.*************85 PP
2	WRKY	105.5	2.7e-33	313	371	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_023540445.1 313 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 371 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MAHDSSSSAI YSMTTMAFSN THASDEGRSS YFEFKPYAGP NMVPADLSHR KGEQSREVQV 60 QGQPQPFTAP PMTKSEINVN SNDLSRSIQM DTVASRASVP EVDGDDFNHS LNTNTRVQPQ 120 QSDPKASGIQ VVSDRLSDDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV KKLFERSHDG 180 QIVDIIYKGT HDHPKPQPSR RYSASASMNV QEDGPDKPSP LTGQDDRSCV IYARAVRTIE 240 PNGTPEPSHA ANDSMAEGVG TTLPPRSHDE VDDDDIFSKR RKMELGGFDV CPMVKPIREP 300 RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT NVGCPVRKHV ERASHDPKAV 360 ITTYEGKHNH DVPTAKTSSH EVQGSLTIAP SRYRLEESDT ISLDLGVGIG AGGENRSNEY 420 RQAFHSQLAE NQNPNGNFNF EIVQENSPPA YFGVLDRGIS QHGSRESLSE SRTMSLNHSS 480 HPYPPSIERI LTGP

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MAHDSSSSAI YSMTTMAFSN THASDEGRSS YFEFKPYAGP NMVPADLSHR KGEQSREVQV  60
QGQPQPFTAP PMTKSEINVN SNDLSRSIQM DTVASRASVP EVDGDDFNHS LNTNTRVQPQ  120
QSDPKASGIQ VVSDRLSDDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV KKLFERSHDG  180
QIVDIIYKGT HDHPKPQPSR RYSASASMNV QEDGPDKPSP LTGQDDRSCV IYARAVRTIE  240
PNGTPEPSHA ANDSMAEGVG TTLPPRSHDE VDDDDIFSKR RKMELGGFDV CPMVKPIREP  300
RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT NVGCPVRKHV ERASHDPKAV  360
ITTYEGKHNH DVPTAKTSSH EVQGSLTIAP SRYRLEESDT ISLDLGVGIG AGGENRSNEY  420
RQAFHSQLAE NQNPNGNFNF EIVQENSPPA YFGVLDRGIS QHGSRESLSE SRTMSLNHSS  480
HPYPPSIERI LTGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	1e-154	WRKY family protein