PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540444.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 578aa MW: 63628.5 Da PI: 6.7964

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.7	8.5e-32	222	279	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++v+i+Y+g+H+h+k XP_023540444.1 222 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIVDIIYKGTHDHPK 279 8**************************************.*************85 PP
2	WRKY	105.2	3.4e-33	397	455	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_023540444.1 397 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 455 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MDPTDADLAD PSHVRLSVSS EPSSASAAGA KYKLLSPAKL PISRSPCITI PPGLSPTSFL 60 ESPVLLTNLK VEPSPTTGSF TKLPMAHDSS SSAIYSMTTM AFSNTHASDE GRSSYFEFKP 120 YAGPNMVPAD LSHRKGEQSR EVQVQGQPQP FTAPPMTKSE INVNSNDLSR SIQMDTVASR 180 ASVPEVDGDD FNHSLNTNTR VQPQQSDPKA SGIQVVSDRL SDDGYNWRKY GQKHVKGSEF 240 PRSYYKCTHP NCEVKKLFER SHDGQIVDII YKGTHDHPKP QPSRRYSASA SMNVQEDGPD 300 KPSPLTGQDD RSCVIYARAV RTIEPNGTPE PSHAANDSMA EGVGTTLPPR SHDEVDDDDI 360 FSKRRKMELG GFDVCPMVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY 420 YKCTNVGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAK TSSHEVQGSL TIAPSRYRLE 480 ESDTISLDLG VGIGAGGENR SNEYRQAFHS QLAENQNPNG NFNFEIVQEN SPPAYFGVLD 540 RGISQHGSRE SLSESRTMSL NHSSHPYPPS IERILTGP

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MDPTDADLAD PSHVRLSVSS EPSSASAAGA KYKLLSPAKL PISRSPCITI PPGLSPTSFL  60
ESPVLLTNLK VEPSPTTGSF TKLPMAHDSS SSAIYSMTTM AFSNTHASDE GRSSYFEFKP  120
YAGPNMVPAD LSHRKGEQSR EVQVQGQPQP FTAPPMTKSE INVNSNDLSR SIQMDTVASR  180
ASVPEVDGDD FNHSLNTNTR VQPQQSDPKA SGIQVVSDRL SDDGYNWRKY GQKHVKGSEF  240
PRSYYKCTHP NCEVKKLFER SHDGQIVDII YKGTHDHPKP QPSRRYSASA SMNVQEDGPD  300
KPSPLTGQDD RSCVIYARAV RTIEPNGTPE PSHAANDSMA EGVGTTLPPR SHDEVDDDDI  360
FSKRRKMELG GFDVCPMVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY  420
YKCTNVGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAK TSSHEVQGSL TIAPSRYRLE  480
ESDTISLDLG VGIGAGGENR SNEYRQAFHS QLAENQNPNG NFNFEIVQEN SPPAYFGVLD  540
RGISQHGSRE SLSESRTMSL NHSSHPYPPS IERILTGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	0.0	WRKY family protein