PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540401.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 751aa MW: 81550.8 Da PI: 6.4793

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2.1e-32	322	379	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k XP_023540401.1 322 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSN-EGHITEIIYKGTHNHPK 379 7**************************************.*************85 PP
2	WRKY	103.1	1.5e-32	536	594	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ XP_023540401.1 536 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 594 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MGRTDDNVAI IGDWVPPSPS TRAFFSAMLG EDVGSRPAMD TITIDKTEEL FQRPREHPVS 60 NNTVARGGIP SANSGDRSMD LSSFSGQKFR GGLVERIAAR AGFNAPRLNT ESIRSTDQSL 120 DSDAKSPYLT IPPGLSPTTL LDSPVFLSNS LAQQSPTTGK FPFLPNVSNR SSMMMSEGDD 180 KGSDNPFNNN STSFAFSSGV ESGSFFYVGA ASKTDSATVL PQSCPRIEVS VPRSENYFQS 240 HLVEPSLSLP QNRISHHPQV GLSTSCVERD DVGKTVSDDQ RTFDSLCGGG EHSSPLDEQP 300 DEGEQRGSGD SMAGGGSGAP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER 360 SNEGHITEII YKGTHNHPKP SPYRRAATGP SDSHINMQLD ISAQGGEQTA EGLLWGDSQK 420 RIPNGAPDWM HENLEVTSSA SLGPEYGNQP NTSQAQNGSH VETVEAIDAS STFSNDEDED 480 DRGTHGSVTL GYEGEGDESE SKKRKLDAYV TEMSGATRAI REPRVVVQTT SEVDILDDGY 540 RWRKYGQKVV KGNPNPRSYY KCTNPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN 600 SSHINSSTSS PVTTQNSTAT TQTHIHRPGP PQPQNTIPRF ERPGFSLPGR QQMGSAHGFS 660 FGMNQPGLRN LTMAAVGQAK LPVLPMHPYL AQAHHVNDMG FLLPKGEPNV EPTSDLGLNF 720 SHGSTVYQQI MSRLPLGPEI RGCSQIQKPL G

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MGRTDDNVAI IGDWVPPSPS TRAFFSAMLG EDVGSRPAMD TITIDKTEEL FQRPREHPVS  60
NNTVARGGIP SANSGDRSMD LSSFSGQKFR GGLVERIAAR AGFNAPRLNT ESIRSTDQSL  120
DSDAKSPYLT IPPGLSPTTL LDSPVFLSNS LAQQSPTTGK FPFLPNVSNR SSMMMSEGDD  180
KGSDNPFNNN STSFAFSSGV ESGSFFYVGA ASKTDSATVL PQSCPRIEVS VPRSENYFQS  240
HLVEPSLSLP QNRISHHPQV GLSTSCVERD DVGKTVSDDQ RTFDSLCGGG EHSSPLDEQP  300
DEGEQRGSGD SMAGGGSGAP SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP NCQVKKKVER  360
SNEGHITEII YKGTHNHPKP SPYRRAATGP SDSHINMQLD ISAQGGEQTA EGLLWGDSQK  420
RIPNGAPDWM HENLEVTSSA SLGPEYGNQP NTSQAQNGSH VETVEAIDAS STFSNDEDED  480
DRGTHGSVTL GYEGEGDESE SKKRKLDAYV TEMSGATRAI REPRVVVQTT SEVDILDDGY  540
RWRKYGQKVV KGNPNPRSYY KCTNPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN  600
SSHINSSTSS PVTTQNSTAT TQTHIHRPGP PQPQNTIPRF ERPGFSLPGR QQMGSAHGFS  660
FGMNQPGLRN LTMAAVGQAK LPVLPMHPYL AQAHHVNDMG FLLPKGEPNV EPTSDLGLNF  720
SHGSTVYQQI MSRLPLGPEI RGCSQIQKPL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-180	WRKY family protein