PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540357.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 358aa MW: 41279.4 Da PI: 6.7906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	175	194	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023540357.1 175 FSCPVCFKTFNRYNNMQMHM 194 89*****************9 PP
2	zf-C2H2	14.5	0.0001	259	281	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_023540357.1 259 FMCRKCGKAFAVRGDWRTHEKNC 281 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MDDPSTNFFT DLFKFNYPTN FHHHHNPPSS NPPPNFFHAP PSSPPLRQAL PLLRLSPTRS 60 SQDHHLSFTS SSAMEIDNNN NHNNDNEDVS VTVALHIGLP SSNASEMATL LVSDNNNQNE 120 EEDQLEEELE EEEDEDEEQQ QAGITISGFS LSSRLNKGQY WIPTPSQILI GPTQFSCPVC 180 FKTFNRYNNM QMHMWGHGSQ YRRGPESLRG TQPTGMLRLP CYCCSPGCRN NIDHPRAKPL 240 KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK 300 DHIKAFGNGH AAYNSNINNN CDHRQQQHHH HHHHHHHHHH AFDEEDESAY SEVEEDHD

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MDDPSTNFFT DLFKFNYPTN FHHHHNPPSS NPPPNFFHAP PSSPPLRQAL PLLRLSPTRS  60
SQDHHLSFTS SSAMEIDNNN NHNNDNEDVS VTVALHIGLP SSNASEMATL LVSDNNNQNE  120
EEDQLEEELE EEEDEDEEQQ QAGITISGFS LSSRLNKGQY WIPTPSQILI GPTQFSCPVC  180
FKTFNRYNNM QMHMWGHGSQ YRRGPESLRG TQPTGMLRLP CYCCSPGCRN NIDHPRAKPL  240
KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK  300
DHIKAFGNGH AAYNSNINNN CDHRQQQHHH HHHHHHHHHH AFDEEDESAY SEVEEDHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-127	C2H2 family protein