PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540223.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 344aa MW: 39786.6 Da PI: 5.6175

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.3	7.7e-36	43	134	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye +ed+++++++sws+++nsf+v+d+++f+ ++LpkyFkhsnf+SFvRQLn+YgFkk++ ++ weF+h+ F +g+k+ll+ XP_023540223.1 43 FLTKTYEFVEDSTTNHIVSWSRDNNSFIVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFKKIDPDK---------WEFAHEGFLRGQKHLLKL 128 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ XP_023540223.1 129 IRRRKT 134 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MNRLRRVKEE FPASNSAFSN GAPSPTVAPQ PMEGLHEAGP PPFLTKTYEF VEDSTTNHIV 60 SWSRDNNSFI VWDPQSFSLT LLPKYFKHSN FSSFVRQLNT YGFKKIDPDK WEFAHEGFLR 120 GQKHLLKLIR RRKTVQPNAT LQAPDPCVEV GRFGLDGEID RLQRDKQVLM GELVKLRQQQ 180 QTTKGQLQTM ERRLKKTETR QQLMMNFLAR AIQFPDFIQQ LIHQKDKHKE LEEAINRKRR 240 RHIDQGLSPT SDEYDEEDKA SFANNIHVDV ELLAVDMNQN NPHFAKEEMG EKGDGIMDDG 300 FWENLLNEAN EEGFGVHGFD EQDDEVEDGD ELVAHFGFLN SNLK

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MNRLRRVKEE FPASNSAFSN GAPSPTVAPQ PMEGLHEAGP PPFLTKTYEF VEDSTTNHIV  60
SWSRDNNSFI VWDPQSFSLT LLPKYFKHSN FSSFVRQLNT YGFKKIDPDK WEFAHEGFLR  120
GQKHLLKLIR RRKTVQPNAT LQAPDPCVEV GRFGLDGEID RLQRDKQVLM GELVKLRQQQ  180
QTTKGQLQTM ERRLKKTETR QQLMMNFLAR AIQFPDFIQQ LIHQKDKHKE LEEAINRKRR  240
RHIDQGLSPT SDEYDEEDKA SFANNIHVDV ELLAVDMNQN NPHFAKEEMG EKGDGIMDDG  300
FWENLLNEAN EEGFGVHGFD EQDDEVEDGD ELVAHFGFLN SNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	241	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-110	HSF family protein