PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540044.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 734aa MW: 81569.8 Da PI: 5.1114

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.3e-05	530	567	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr+++P+ a K s + Lek+v ++ +Lq XP_023540044.1 530 RQLIQDRIKELRQIVPNgA------KCSIVGLLEKTVMHMLYLQ 567 7789***********66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
METSALKQLL KSLCNNSQWI YAVFWKIKYQ NPSILTWEDG YCNGSKLENH MGSMTECRMI 60 NEREEHVSSY YGTNIHNGDS GGCSVGAAVA DMFYLQYAVG EGTVGSVASS GNHSWVFLEN 120 LFTSDLLSAS IYEGPTEWLL QYASGIKTIL LVPVLPFGVL QLGSLQMLTE NLSMVGYIKD 180 RVSAINSVDG NATSVASDKG VWPLCASVVP SPFGSLDDPT NVTSCMFQAE KHGAMDDVKP 240 LVSTFNQFVT NQDVPTVSRR TRPETLHSEK GHKGELEGTT MEEPFASLYQ SIRDSEVEFS 300 DLFCLEPLLP PCSQLRNNET GLFEGNPRSV HSCSVDNVVG QQFGHNLVSK KEYGSADNFF 360 SFPDDCELLE ALGSALPAHK HTNELAHDSS SSINNTTSSL MCSSDFKEGD LEHLLEAMIT 420 ADDTFLNNTI NARISSPVVG RSGLSAKTCC QSESSAVVVD DPALWIFPES KVTETGRKYL 480 TSLSTSNSLV ISAREENDCD ITKHKNGMKS SNFRRRIKVT SNAKQRPRDR QLIQDRIKEL 540 RQIVPNGAKC SIVGLLEKTV MHMLYLQRVT DQAEKLKQLA QEGSNSEYST VLEHEDSQPN 600 GASWAWAFDI GSELQVCPIV VEDLEYKGHM LIKILCDDMG LFLEISQILR DLELTILKGV 660 IERHSNNSWA HFIVETPRGF HRMDVFWPLL HLLQRKRNPV SGLDLSTRDP FLSSDTPGFT 720 HYSEQYKGFN SSYP

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

METSALKQLL KSLCNNSQWI YAVFWKIKYQ NPSILTWEDG YCNGSKLENH MGSMTECRMI  60
NEREEHVSSY YGTNIHNGDS GGCSVGAAVA DMFYLQYAVG EGTVGSVASS GNHSWVFLEN  120
LFTSDLLSAS IYEGPTEWLL QYASGIKTIL LVPVLPFGVL QLGSLQMLTE NLSMVGYIKD  180
RVSAINSVDG NATSVASDKG VWPLCASVVP SPFGSLDDPT NVTSCMFQAE KHGAMDDVKP  240
LVSTFNQFVT NQDVPTVSRR TRPETLHSEK GHKGELEGTT MEEPFASLYQ SIRDSEVEFS  300
DLFCLEPLLP PCSQLRNNET GLFEGNPRSV HSCSVDNVVG QQFGHNLVSK KEYGSADNFF  360
SFPDDCELLE ALGSALPAHK HTNELAHDSS SSINNTTSSL MCSSDFKEGD LEHLLEAMIT  420
ADDTFLNNTI NARISSPVVG RSGLSAKTCC QSESSAVVVD DPALWIFPES KVTETGRKYL  480
TSLSTSNSLV ISAREENDCD ITKHKNGMKS SNFRRRIKVT SNAKQRPRDR QLIQDRIKEL  540
RQIVPNGAKC SIVGLLEKTV MHMLYLQRVT DQAEKLKQLA QEGSNSEYST VLEHEDSQPN  600
GASWAWAFDI GSELQVCPIV VEDLEYKGHM LIKILCDDMG LFLEISQILR DLELTILKGV  660
IERHSNNSWA HFIVETPRGF HRMDVFWPLL HLLQRKRNPV SGLDLSTRDP FLSSDTPGFT  720
HYSEQYKGFN SSYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-44	bHLH family protein