PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539984.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 782aa    MW: 85958.3 Da    PI: 5.274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.64.8e-1004207812374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ ++  pp+  ++ +++ ++ a+k+fse+sP+++f ++
  XP_023539984.1 420 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPCDVIFKMGAYKVFSEISPLIQFVNF 512
                     679*************************************************98..6777788899999999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+lea++  +++Hi+Dfdi+ G+QW++++q+L+ R++g+psl+iT+++sp+++   el  ++++L++fA+ +g++fef+v+   ++++l+ 
  XP_023539984.1 513 TCNQALLEALDDVDQIHIVDFDIGFGAQWASFMQELSLRNQGAPSLKITAFASPSTHYPIELGLMRDNLTQFANDIGISFEFEVV---NFDSLNQ 604
                     ************************************************************************************8...5555554 PP

            GRAS 192 eeL..rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++   +++   +Ea+aVn+ l   +  ++++ l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++
  XP_023539984.1 605 NSFslPFSRaseNEAIAVNFPL--WSSSNQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 692
                     444223333555*******999..555566777777....*********************************************887.7899** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +k+Er+ll+++i++ v  + +      +++  W+  + +aG++pv++s+++++qa+++ ++++++g++ve++++slv++W++r+L+s+SaWr
  XP_023539984.1 693 INKIERFLLQPRIESTVLGRLRV----PQRMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVFCWQRRELISASAWR 781
                     *****************998887....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    
MRGIPFQFQG KGELEISAAF SSPICSGFAQ KWVKKGEQQQ QQQQQQQLEA EEEQEEGLSY  60
FVLPNNEPTS VLHMRSPSPP TSASTLSSSF GGGGAGGGCV PSFPPETPSV EPLNGAGVGT  120
PIFPGGLERC GVGLEDLESM WTESAGPEQS FLRWIAGDVV EDPSLGIKTV LQNGNIPFDM  180
DSNGSMGIVD QGSEFDPAAA AAAAGNVLSN INPNLSFPVA AACTGFSDVN GSNNKPFSRT  240
TYKSSCLGLN NRHGNFNVQN PIFSGSVENL VVPVSAMIYP PQLPPFEALD EKPQNLNAQV  300
LLNQHQQHPQ NPSFFGPLAF GQTEQQLQPQ LKRHNSSGGV DPNGAIPKVP FMDPGNEMFL  360
RNHQQVLQQQ QHQQQLGYPL GLQFLPQQKA MSPKPKVIGL SDDEMAYQNP PQQQQQHALL  420
DQLYKAAELV GTGNFSHAQG ILARLNHQLS PVGKPLQRAA FYFKEALQLL LLMNNPVNPP  480
PPRCPTPCDV IFKMGAYKVF SEISPLIQFV NFTCNQALLE ALDDVDQIHI VDFDIGFGAQ  540
WASFMQELSL RNQGAPSLKI TAFASPSTHY PIELGLMRDN LTQFANDIGI SFEFEVVNFD  600
SLNQNSFSLP FSRASENEAI AVNFPLWSSS NQPAMLPSLL RFIKQLSPKI VVSLDRGCDR  660
SDLPFPQHML QALQSYINLL ESLDAINMNS DAINKIERFL LQPRIESTVL GRLRVPQRMP  720
LWKTLFASAG YTPVTFSNFT ETQAECVAKR TSVRGFHVEK RQASLVFCWQ RRELISASAW  780
RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-122GRAS family protein