PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539946.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 661aa MW: 72890 Da PI: 6.334

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.3	1.7e-28	203	256	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_023539946.1 203 KPRVVWSVELHQQFVGAVNQL-GIEKAVPKKILELMNVPGLTRENVASHLQKYRL 256 79*****************.******************************8 PP
2	Myb_DNA-binding	39	1.9e-12	205	255	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qky+ XP_023539946.1 205 RVVWSVELHQQFVGAVNQLGIEkaVPKKILELMNvPGLTRENVASHLQKYR 255 678***********************************************7 PP
3	Response_reg	73	1.2e-24	26	134	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ +y ev+ ++ +e+al l++ + +D++l D+ mp+mdG++ll+ i e +lp+i+++ + ++ + + + G XP_023539946.1 26 VLVVDDDPTCLMILEKMLRICRY-EVTKCSRAEDALSVLRRYKngFDIVLSDVHMPDMDGFKLLECIGLEM-DLPVIMMSVDDGKNVVMKGVTHG 118 89*******************.***********999999******************6654.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_023539946.1 119 ACDYLIKPVRIEALKN 134 **********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MSTASSSSVR KPSESVPLQF PAGLRVLVVD DDPTCLMILE KMLRICRYEV TKCSRAEDAL 60 SVLRRYKNGF DIVLSDVHMP DMDGFKLLEC IGLEMDLPVI MMSVDDGKNV VMKGVTHGAC 120 DYLIKPVRIE ALKNIWQHVV RKRKNEWKDL EQSGVEDVDR QQKANEEPDY SSSANEGSWR 180 NSKRRKEDID DAEERDDSST LKKPRVVWSV ELHQQFVGAV NQLGIEKAVP KKILELMNVP 240 GLTRENVASH LQKYRLYLRR VSGMTLQQSN LNNTFMSAQE AFGSTLNGLD LQTLAAAGQL 300 QPQSLATLQA AGFGRSTAKS GMPMPLVDQR NHFFSFENPK LRFSDGQQPH LNGSKPMNLL 360 HGIPTTMEPK QLANLQQHSA QSHGNMTMQA SAQGGQTSSQ LMQTPQPQAR PQILNECTAT 420 SVTRLPPTIQ QSILPNGTAG SVLARNGFTT NSRGGGYNLI SPASTMSNFP MNQTAELPGN 480 SFPLQSTPGM SSIVPKGRFP DEVNSVSDIK GSDGFVPSYD MFRDLHPQKP DWDLQHVGVT 540 FDASQGSLDI PTAAFGHQGY ASSQQNGHNR HTSTVGKAMF LLEEGSDNGN AQSMGQQLNP 600 LFDDGSVRVK MERASETSSQ TDLFSEHFGQ EEDLMSALLK QQGSIATAES ELEWFHHNTP 660 V

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MSTASSSSVR KPSESVPLQF PAGLRVLVVD DDPTCLMILE KMLRICRYEV TKCSRAEDAL  60
SVLRRYKNGF DIVLSDVHMP DMDGFKLLEC IGLEMDLPVI MMSVDDGKNV VMKGVTHGAC  120
DYLIKPVRIE ALKNIWQHVV RKRKNEWKDL EQSGVEDVDR QQKANEEPDY SSSANEGSWR  180
NSKRRKEDID DAEERDDSST LKKPRVVWSV ELHQQFVGAV NQLGIEKAVP KKILELMNVP  240
GLTRENVASH LQKYRLYLRR VSGMTLQQSN LNNTFMSAQE AFGSTLNGLD LQTLAAAGQL  300
QPQSLATLQA AGFGRSTAKS GMPMPLVDQR NHFFSFENPK LRFSDGQQPH LNGSKPMNLL  360
HGIPTTMEPK QLANLQQHSA QSHGNMTMQA SAQGGQTSSQ LMQTPQPQAR PQILNECTAT  420
SVTRLPPTIQ QSILPNGTAG SVLARNGFTT NSRGGGYNLI SPASTMSNFP MNQTAELPGN  480
SFPLQSTPGM SSIVPKGRFP DEVNSVSDIK GSDGFVPSYD MFRDLHPQKP DWDLQHVGVT  540
FDASQGSLDI PTAAFGHQGY ASSQQNGHNR HTSTVGKAMF LLEEGSDNGN AQSMGQQLNP  600
LFDDGSVRVK MERASETSSQ TDLFSEHFGQ EEDLMSALLK QQGSIATAES ELEWFHHNTP  660
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	0.0	ARR-B family protein