PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023539940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 267aa MW: 30099.7 Da PI: 6.715 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 98 | 152 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_023539940.1 98 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 152 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 130.3 | 7.8e-42 | 98 | 187 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l XP_023539940.1 98 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 187 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence |
MMSSKHDNLS LSLGLSFDSH YLQLNLRPSW NDHASSDRTS ENRMPPSPVD CEEEEEEEEA 60 AVSSPNSTVS TVSGKRSEPE TNNGEDLDGD EEDAETSRKK LRLTKDQSAV LEDSFKEHNT 120 LNPKQKLALA KQLGLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCCENL TEENRRLQKE 180 VQELRALKLS PQFYMHMAPP TTLTMCPSCE RVAVPSSTSA PLNVTRMGPA QAQAQAQSKA 240 LHSRPIHVNP WASAIPARPF NALHPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 103 | SRKKLRL |
2 | 147 | 155 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 9e-70 | HD-ZIP family protein |