PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539923.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 487aa MW: 52433.7 Da PI: 8.3631

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.3e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_023539923.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP
2	zf-CCCH	38.3	2.2e-12	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtG Ck+G +Ck++H++ XP_023539923.1 96 QPLCQYYMRTGMCKFGTSCKYHHPQ 120 79*********************97 PP
3	zf-CCCH	35.8	1.3e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_023539923.1 141 GEKECSYYLKNGQCKFGATCKFHHPE 166 6789********************96 PP
4	zf-CCCH	38.9	1.5e-12	310	336	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++C+++H+p XP_023539923.1 310 PGQPECQFYMRTGDCKFGSSCRYHHPP 336 5789*********************97 PP
5	zf-CCCH	35.4	1.7e-11	358	382	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+Ck+G+ CkF H++ XP_023539923.1 358 APPCTHFMQRGICKFGPACKFDHSM 382 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERSAVLG GGSRPGGRDY PERVGQPLCQ YYMRTGMCKF GTSCKYHHPQ 120 QEMGSLSPVS LNFYGYPLRQ GEKECSYYLK NGQCKFGATC KFHHPEPAGL QFPVPSPVQV 180 APLPAPMPPA PSVYPPVQSP SAHSSQQYGV ILARSPMLSS PYVPSPYGPI PYGPMLVSPG 240 IVQFPSWNPY QAPMSPVASP SAQPSVGSGQ LYGMAQVSPS APAYAGSYQP MPSAGASSTS 300 QKEHSFPERP GQPECQFYMR TGDCKFGSSC RYHHPPELVN SRSSVVLSQI GLPLRPGAPP 360 CTHFMQRGIC KFGPACKFDH SMERLSYSPS ASSLADMPVA PYPVGSVVGT LAPSFSSSEL 420 RPEHFSGPRM DSNPSRMSSS MSTSSGLAGS TTSRTEMHSH SNVQRSSQSS GLSASSTSST 480 TSVEGRT

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERSAVLG GGSRPGGRDY PERVGQPLCQ YYMRTGMCKF GTSCKYHHPQ  120
QEMGSLSPVS LNFYGYPLRQ GEKECSYYLK NGQCKFGATC KFHHPEPAGL QFPVPSPVQV  180
APLPAPMPPA PSVYPPVQSP SAHSSQQYGV ILARSPMLSS PYVPSPYGPI PYGPMLVSPG  240
IVQFPSWNPY QAPMSPVASP SAQPSVGSGQ LYGMAQVSPS APAYAGSYQP MPSAGASSTS  300
QKEHSFPERP GQPECQFYMR TGDCKFGSSC RYHHPPELVN SRSSVVLSQI GLPLRPGAPP  360
CTHFMQRGIC KFGPACKFDH SMERLSYSPS ASSLADMPVA PYPVGSVVGT LAPSFSSSEL  420
RPEHFSGPRM DSNPSRMSSS MSTSSGLAGS TTSRTEMHSH SNVQRSSQSS GLSASSTSST  480
TSVEGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-131	C3H family protein