PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539890.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 422aa MW: 45917.7 Da PI: 8.3978

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.8	6e-26	155	199	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ XP_023539890.1 155 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVET 199 79****************************************986 PP
2	QLQ	45.9	1.8e-16	83	118	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+aaQ q+L+ Q+l+++y++a++ vPpeLl+ i+k XP_023539890.1 83 YFSAAQRQELELQALIFRYMLAGAAVPPELLLTIKK 118 7******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MDFHLKQCRE QEESEEQHSA KISKFFLQHP QSSVSSVSSV SSVSSVLPLF VSDSNNNSKA 60 SSILSPFPDS TPSANTLPRM WGYFSAAQRQ ELELQALIFR YMLAGAAVPP ELLLTIKKSL 120 LSSSTPFFLH HPLQHFPHYP TSLLQAGYWG RAAMDPEPGR CRRTDGKKWR CSRDVVAGQK 180 YCERHMHRGR NRSRKPVETA TINPSTTTST AGANGGGGGC SLSSNTNRVV GGGGRPFLAV 240 ESGNYFSLSG QTPSVDLLHL NQRSCSDSLS EHKNFYESHK EAVAGDAKSD SHILRHFFDD 300 WPRSNNNGSD NVTRKMNSTS ASTTSLSISI PENPSSSSDV SLKLSTGGSS DQGVGHHIHQ 360 DGNSEREHTH LNWAAGWAAT QMASMGGPLA EVLRSTNNNS SPTSILHQLQ RATNSEASYI 420 ST

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MDFHLKQCRE QEESEEQHSA KISKFFLQHP QSSVSSVSSV SSVSSVLPLF VSDSNNNSKA  60
SSILSPFPDS TPSANTLPRM WGYFSAAQRQ ELELQALIFR YMLAGAAVPP ELLLTIKKSL  120
LSSSTPFFLH HPLQHFPHYP TSLLQAGYWG RAAMDPEPGR CRRTDGKKWR CSRDVVAGQK  180
YCERHMHRGR NRSRKPVETA TINPSTTTST AGANGGGGGC SLSSNTNRVV GGGGRPFLAV  240
ESGNYFSLSG QTPSVDLLHL NQRSCSDSLS EHKNFYESHK EAVAGDAKSD SHILRHFFDD  300
WPRSNNNGSD NVTRKMNSTS ASTTSLSISI PENPSSSSDV SLKLSTGGSS DQGVGHHIHQ  360
DGNSEREHTH LNWAAGWAAT QMASMGGPLA EVLRSTNNNS SPTSILHQLQ RATNSEASYI  420
ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-52	GRF family protein