PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539801.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GATA

Protein Properties

Length: 532aa MW: 59630.5 Da PI: 6.4603

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.9e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_023539801.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPLHA RADPDEYDDK 60 RLSRLKNSSV YKNKEVKLLK RKHYQDHGVV VGVIPDHAQS FHKAVDEDTS NRSSSGSAIS 120 NSESCAQFGG ADGSDLTGPS QSTAWESMVP SRKRTCVDRP KSTAVEKLTK DLYTILREQQ 180 SYFSGSSEED LLFESETPMV SVEIGHGSIL MRHPSSIARE EESEASSISV DHKHFSVNEA 240 YSESSIVPST LGIGRKHSNG QAFLQEQIKK DRPQSEKVQA LGNHNSPLCN IDLTIILNFR 300 EFTKQLTSGD QRELMKYLPS VDTEELPDSL NSMFESPQFK ENLNSFKQLL TEGVFDFSFP 360 GAKREDCKML SRLVLWDLSK SKWVEQYDRL KVRSYLTGNH GDLVIDNVFY GLQKCSTSFV 420 DDKRLLDGQN KKFSETRITM TSPRRVTTKT SVESKELVDD SFCFSPRSLF ALPSDGSSFT 480 LESLHFDEDS FDQDLLLDVR SNSSFPQAEL LSFGGEQASN SSSSINLRLM HR

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPLHA RADPDEYDDK  60
RLSRLKNSSV YKNKEVKLLK RKHYQDHGVV VGVIPDHAQS FHKAVDEDTS NRSSSGSAIS  120
NSESCAQFGG ADGSDLTGPS QSTAWESMVP SRKRTCVDRP KSTAVEKLTK DLYTILREQQ  180
SYFSGSSEED LLFESETPMV SVEIGHGSIL MRHPSSIARE EESEASSISV DHKHFSVNEA  240
YSESSIVPST LGIGRKHSNG QAFLQEQIKK DRPQSEKVQA LGNHNSPLCN IDLTIILNFR  300
EFTKQLTSGD QRELMKYLPS VDTEELPDSL NSMFESPQFK ENLNSFKQLL TEGVFDFSFP  360
GAKREDCKML SRLVLWDLSK SKWVEQYDRL KVRSYLTGNH GDLVIDNVFY GLQKCSTSFV  420
DDKRLLDGQN KKFSETRITM TSPRRVTTKT SVESKELVDD SFCFSPRSLF ALPSDGSSFT  480
LESLHFDEDS FDQDLLLDVR SNSSFPQAEL LSFGGEQASN SSSSINLRLM HR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-151	GATA family protein