PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539558.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 37090.7 Da PI: 8.0598

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.4e-18	201	255	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_023539558.1 201 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 255 788899***********************************************98 PP
2	HD-ZIP_I/II	124.6	4.4e-40	201	289	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE+sF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr+ XP_023539558.1 201 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRA 289 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MELGLRLGDA PNSNNPFGVR SIPSSSSSLM ALGFCVGLGH GYGYGSGSGS GSGFGRVHDE 60 DGRDVKDDDE KTIPGSGYGL DPPVQLDLLP LAPVPRSSHQ SSSTLPFSCL SHRLMPELGC 120 TDKVLDVNRP PALAAAVEMI PVEETEDKSP NSTVTSFQMD FGVRNGGGRG RTRSKRSSDM 180 EMETERSSSR ISDDEENASA RKKLRLSKEQ SAFLEQSFKQ HSTLNPKQKA ALAKQLNLRP 240 RQVEVWFQNR RARTKLKQTE EDCEYLKRWC ETLTEENRRL QKELQELRAF KASQPFYSHL 300 PATTLTMCPS CERVVATAPA TSIATTSTTA AAPPRILI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	RTRSKR
2	250	258	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-69	HD-ZIP family protein