PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539451.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 241aa MW: 25833.9 Da PI: 6.9392

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.6	2.4e-39	40	141	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f+++q ++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael XP_023539451.1 40 PCGACKFLRRKCVNGCIFAPHFASDQgVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 134 7***********************77*************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_023539451.1 135 AAVQSQL 141 *9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MADADHQFPR RKDLGKRTSS AANTDTTSTT PTDIGAATAP CGACKFLRRK CVNGCIFAPH 60 FASDQGVARF AAVHKVFGAS NVSKLLLHIP LSRRNDAVVT ISYEAQARLS DPVYGCVSTV 120 LALQQQVASL QAELAAVQSQ LISSRLAFAS AIQNSQPPQV GVQLQPAYSN NSSISVSAST 180 SAHNAINLSS FASNYDLPAE TAPSPHHLEP LHLPRRSIED EEDEENSQLP TIFADDLLRP 240 R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	7e-51	LBD family protein