PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539334.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 343aa MW: 38013.7 Da PI: 6.1479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.4e-14	162	208	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_023539334.1 162 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 208 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MRGEDQQEEH HQQQQECSQT IENMFQQQLL LHQHLQNNND DDNNNGDHHH GTGRGLIFPP 60 ELVSPVLQPW SSSLNPFMIP PPPSLPCSSS SSYGGLFNRR PPNCVQFAYD GSSSADHLGQ 120 IISTTLGPVV HPGSMAPFGL QAELGKMSAQ EIMDAKALAA SKSHSEAERR RRERINNHLA 180 KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETSP IPTEVDEVTV DDASEEMMIS 240 GAKFVIKASL CCEDRSDLLP DLIKALKSLR LRTLKAEITT LGGRVRNVLF ITAEEEQQHD 300 PEQQHNMSSI QEALKAVMER TGGDDSSSAN IKRLRTTNNI NIL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MRGEDQQEEH HQQQQECSQT IENMFQQQLL LHQHLQNNND DDNNNGDHHH GTGRGLIFPP  60
ELVSPVLQPW SSSLNPFMIP PPPSLPCSSS SSYGGLFNRR PPNCVQFAYD GSSSADHLGQ  120
IISTTLGPVV HPGSMAPFGL QAELGKMSAQ EIMDAKALAA SKSHSEAERR RRERINNHLA  180
KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETSP IPTEVDEVTV DDASEEMMIS  240
GAKFVIKASL CCEDRSDLLP DLIKALKSLR LRTLKAEITT LGGRVRNVLF ITAEEEQQHD  300
PEQQHNMSSI QEALKAVMER TGGDDSSSAN IKRLRTTNNI NIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-90	bHLH family protein