PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539309.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 465aa MW: 52503.4 Da PI: 5.9454

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.6	9.1e-25	115	214	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li+a+ +++++ ++++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_023539309.1 115 KWTDMMVRLLITAVFYIGDEGGTEQadhagkkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTL 209 7******************99877788889999999******************************************559*****9 PP trihelix 82 fdqle 86 +d++e XP_023539309.1 210 LDSME 214 99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MESDSLGGDG GGGGGGGGGM FSGMNSAMLG LDLPLHPHPT NPPNSHQLHH PSMVSYVPQK 60 PQLQQQPPPT AVRYPYPAKP KPQQSNLSDD EEQGFAVEDG NSDGKKKISP WQRMKWTDMM 120 VRLLITAVFY IGDEGGTEQA DHAGKKKPVG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK 180 FNDLNKRYKR VNDILGKGTA CRVVENQTLL DSMELTPKTK EEVRKLLNSK HLFFREMCAY 240 HNTCRHSTGN NGGGGAHPSP DTAAEPPSHL QQHHQQQQRC FHATETAATA ATVGADGDDE 300 DEDDEEDESE EDEDDEEEEE IEGTSRGHEE EDETESRKRA RKGGIAVAAM QQLNAEVIGV 360 LQDGGRSPWE KKQWMKSRLI QLEEQQVNYQ SQAFELEKQR LKWLKFRSKK ERDMERAKLE 420 NEKRRLETER MVLMVKQKEL DWMDMHHYQQ QHSSNKRGDP SSITG

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MESDSLGGDG GGGGGGGGGM FSGMNSAMLG LDLPLHPHPT NPPNSHQLHH PSMVSYVPQK  60
PQLQQQPPPT AVRYPYPAKP KPQQSNLSDD EEQGFAVEDG NSDGKKKISP WQRMKWTDMM  120
VRLLITAVFY IGDEGGTEQA DHAGKKKPVG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK  180
FNDLNKRYKR VNDILGKGTA CRVVENQTLL DSMELTPKTK EEVRKLLNSK HLFFREMCAY  240
HNTCRHSTGN NGGGGAHPSP DTAAEPPSHL QQHHQQQQRC FHATETAATA ATVGADGDDE  300
DEDDEEDESE EDEDDEEEEE IEGTSRGHEE EDETESRKRA RKGGIAVAAM QQLNAEVIGV  360
LQDGGRSPWE KKQWMKSRLI QLEEQQVNYQ SQAFELEKQR LKWLKFRSKK ERDMERAKLE  420
NEKRRLETER MVLMVKQKEL DWMDMHHYQQ QHSSNKRGDP SSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-106	Trihelix family protein