PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539154.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 678aa    MW: 75213.7 Da    PI: 6.5112
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539154.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.6e-22128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_023539154.1 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_023539154.1 219 NGELRVGVRR 228
                     999*****97 PP
2Auxin_resp102.65e-34254336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d  +  W nS WrsLk
  XP_023539154.1 254 ASHAVSTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLK 336
                     789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MSFSAVSSLP PGGPTSGPSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM  60
HQGLEQQMPS FNLPSKILCK VVNVVLRAEP DTDEVYAQIT LLPESNQSEV TSPDPALPEP  120
TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA SDLHGNQWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAVST GTLFSVFYKP RTSRSTFLVS LNKYLEAQNH KLSVGMRFKM  300
RFEGEEVPER SFSGTIVGLG DNASPGWANS DWRSLKVQWD EPSSILRPDR VSSWELEPLV  360
ASSPLSSLPA QRNKRPRPAV LPSPSADAAV LGGWKPTVES SAFSYTEPQR GRDLYSSPKF  420
STAASNSLGF NGNNSLGAVS SNAYWSNTSM VENVMDTSSH GAKREPVEKK QNTRNGCRLF  480
GFQLLGNSNV EEASPVSTPK MVGEDRPVPP IDTAFDQHFD PSNIHRSDMP SVSCDADKSC  540
LISPLESQSR QIRSCTKVQM QGIAVGRAVD LTRFNQYDDL LRKLEEMFDI EGELCGSVKK  600
WKVVYTDDED DMMMVGDDPW NEFCSMVRKI FIYTTEEVKR LSPKIKLPLS GEMKLSKPDS  660
DMVANHTEDQ SSISGSDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein